LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g02152	ATGGACTGCAACAAAGATGAGGCGGTGAGGGCTAGGCAAATGGCCGAAGTTAAAATGCAAAGTGGTGAATTTGTGGAGGCACTCAGGTTGGCTACCAAGGCTAAAAGACTTTATGCTGATGTTGAAAACATTACTCAGATCCTTACCATCTGTGAGGTTCACAATGCTGCGAATAAAAAGGTCTCTGCCACTGACATGGACTGGTATGCGATACTTCAGATTGAAAGATTGGCTGATGAAGCAATCATAAAGAAACAGTACAGGAGGCTTGCACTGCTACTTCATCCTGACAAGAACAAGTATGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGCAAGCCAATGGGGTCTTGAGTGACCAAACAAAACGTTCTTTGTATGACAGCCGGTTTGGAATCTCTGTGAGAGGTGCTGCGCAGAAATCCACTGCAAAACGTGGTGCAGAAAAATGTCAGAAACGTTCTGAATCACAACATAACTCACATGGGAATGTGTTCACTGCAAAGCGTGATGAAACTGCAACAAATTATCAGAAGAATTCTTATCCAAACCCCGCCGATTCCAACAATCAAGCTGGACCGATGACATTCTGGACAACTTGCCCACATTGTAGTTTTAAGTTCGAGTACTGCATACAGTATGCGTACGCAAACTTATTGTGTATGCAGTGCTTGAAATCATTTAAAGCTCAAGTATTTATTTTTGGTGCTCCACCGCCGCAGCCAAAGTTTACTTCAGTAAATCTCCAGAAAGAGGCTCCAAATCCTGGTCCCCCAAAACCAGATTCAGAAAGCACTGATCAGAAACCCTTTGATAAAGAACGTACTGCCAGGTCTGTGCGTTCGGATACTACATCTATGAAAAAATGTGCTGCTGGAGTTGGTGCTCATTGTGAAAAGAGTAAAGATGGCTCTGTTCCTGCATCGAAGGTCATGGAGCCACAATCCTCTAAAAATGTTGGAAGCAAGAGAGTAAGGCAGTCAGCACCAGATTCAGGAAAAAGCTCCAAAGATAGCAACAGTGGTAAGGTGAGAGATGCTAATGTTCGAGAAAATGATCTAGATCATTCAAGTGCTGGTGCAAGGAGATCTTCAAGGAAAAAACAGCGTGTTTTATATACAGAAACCTCTGAAGATGACGATCACGAAATTCTTTCCGAATCGCCACGACAAAATGAACCACTTGAAGCCGATGACGTTGAGAATAAGACTGAGCCGGCAAGTAATGGATCGTCCAACAGCGACAATCCAGCTACTTCAACTGCTGGTGTGGCTGATCAGAACACGGAGAATGAATCCGAGTCAGAAGAGTATAACTGCTCTTCACCGAGTTCAAATATTCCTTCTAGTCCAAAGATCCTTTCTTGTTTTGACGCAGAATTCAATGATTTCGAAATGGATAAGGAGGAGGGTCGCTTTGCTGCTAAACAAATATGGGCAGTGTATGATAACAGTGATGCGATGCCAAGATTTTATGCTATAGTCAAGAAAGTTCTTTCCCCTTTCGAGTTGCAGATTACTTGGTTGGAGGCTGATCCAGATGACGAAGAAGAGCTTGATTGGCAGGATGCAGATTTGCCTATTGCCTGCGGTAAGTTCAGACTCGGTAGTTCTCAGAAAACTACAGATCGTACTATGTTCTCTCATCAGGTGCGGTGCATAAAACAAACCGGCAAACGTTCTTATCTGGCATATCCCCGTAAAGGAGAAACTTGGGCAATTTTCAGAGATTGGAATATCAAATGGAGTTCGAATCCAAATAAACATGTTGTGCCGCATGACCTTGAGTATGTGGAGATCTTATCAGATTTTTCTGAAAACGTGGGCATCGCTGTTGCTTATCTGGACAAAGTGAAAGGATTTGTTAGCCTCTTTCAGGAAACTTTGGCGACTAAAGTGGTCAAGTTTTATGTCCGTCCTAATGAGCTTTATAGGTTCTCGCATCAAGTTCCTTCTTATAAGATGTCTGGTAATGAAAGGGAGGGTGTTCCAAGAGGATCTTTTGAATTTGATCCTGCTGCCCTGCCTTCTAATCTCTTTGAAGATGGTGATTCGGGTAATTTGAAGATGAATAGCTGA	2079	0.4305	MDCNKDEAVRARQMAEVKMQSGEFVEALRLATKAKRLYADVENITQILTICEVHNAANKKVSATDMDWYAILQIERLADEAIIKKQYRRLALLLHPDKNKYAGAEAAFKLIGQANGVLSDQTKRSLYDSRFGISVRGAAQKSTAKRGAEKCQKRSESQHNSHGNVFTAKRDETATNYQKNSYPNPADSNNQAGPMTFWTTCPHCSFKFEYCIQYAYANLLCMQCLKSFKAQVFIFGAPPPQPKFTSVNLQKEAPNPGPPKPDSESTDQKPFDKERTARSVRSDTTSMKKCAAGVGAHCEKSKDGSVPASKVMEPQSSKNVGSKRVRQSAPDSGKSSKDSNSGKVRDANVRENDLDHSSAGARRSSRKKQRVLYTETSEDDDHEILSESPRQNEPLEADDVENKTEPASNGSSNSDNPATSTAGVADQNTENESESEEYNCSSPSSNIPSSPKILSCFDAEFNDFEMDKEEGRFAAKQIWAVYDNSDAMPRFYAIVKKVLSPFELQITWLEADPDDEEELDWQDADLPIACGKFRLGSSQKTTDRTMFSHQVRCIKQTGKRSYLAYPRKGETWAIFRDWNIKWSSNPNKHVVPHDLEYVEILSDFSENVGIAVAYLDKVKGFVSLFQETLATKVVKFYVRPNELYRFSHQVPSYKMSGNEREGVPRGSFEFDPAALPSNLFEDGDSGNLKMNS	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g02152	692	MobiDBLite	consensus disorder prediction	670	692	-	-
	Viun7g02152	692	MobiDBLite	consensus disorder prediction	338	403	-	-
	Viun7g02152	692	SUPERFAMILY	Chaperone J-domain	62	130	IPR036869	-
	Viun7g02152	692	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	681	-	-
	Viun7g02152	692	MobiDBLite	consensus disorder prediction	245	448	-	-
	Viun7g02152	692	MobiDBLite	consensus disorder prediction	404	448	-	-
	Viun7g02152	692	Pfam	DnaJ domain	67	128	IPR001623	-
	Viun7g02152	692	Pfam	Domain of unknown function (DUF3444)	452	659	IPR024593	-
	Viun7g02152	692	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Viun7g02152	692	MobiDBLite	consensus disorder prediction	310	337	-	-
	Viun7g02152	692	CDD	DnaJ	67	120	IPR001623	-
	Viun7g02152	692	PRINTS	DnaJ domain signature	123	142	IPR001623	-
	Viun7g02152	692	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Viun7g02152	692	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Viun7g02152	692	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Viun7g02152	692	MobiDBLite	consensus disorder prediction	265	282	-	-
	Viun7g02152	692	SMART	dnaj_3	66	123	IPR001623	-
	Viun7g02152	692	Gene3D	DnaJ domain	64	180	IPR036869	-
	Viun7g02152	692	MobiDBLite	consensus disorder prediction	138	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g02152	Viun-Chr7	26112771	26115691	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g02152	47	230	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT5G64360	35.938	6.42e-24	103

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g02152	-		-	gmx:102662460	864.374