Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02144 ATGGCCAAGCAAACGCTAGCACAGTGTTTATGGGACCAGGATCAAGACAATGCGAATAAATCGAAAAAGGTTTCAGATTGGGATGCTTTAAATCATAAACCTGAAAAAAAACATTTCTCTTGCTCATCTTCTGCTCATGACTTGAGGCATTTGGAATTGGAGAAAGAGAAAGAGAATGTGGCATCACCAAGAGGAGTTTTAGAAGCATGCATGAAAGACTTTGACTCTCGAATATTAGCTAAACCGGAAAAAAGTTGTTCAAGCACAAGGGCACACTCTAACTGGACCAATTTTTTCAAACTTTTCAAGAAAAAATCTTTCAAGCGGCTAGGGACCCTCTCCAATATCAGTGTTCCAAGGATACCAAAATGGAAAAGCAGAAGTACAAGAGAAAATCACGTTTTAAGCAAGCTCTGTAATAACTTCAACTCTTCTTGGGTCACTTTTAACCTTTCTGAGCTCAGAAAAGCGACCAACAATTTTGACAGTGAAAATATAATTGGAAGAGGTGGTTTTGCTGAAGTTTACAAGGGGTGTCTCGAAGATGGACAATTAATAGCTGTGAAGAAATTGAATAAAGGAACCACAGAAGAAAAAACTGCGGGCTTTCTATCTGAGATAGGTGTAATTGCTCACGTTGATCATCCTAATACTGCCAAGCTTGTTGGATGTTGTGTGGAAGGAGAAATGCATCTTGTCTTTGAACTATCTAAACTAGGAAGTTTAGGAACTCTTCTTCATGGTTCAGATAAAAGCAAACTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGAGTTGTCACAGACGAATCATTCACAGAGATATTAAGGCAGAGAATATTCTAGTCACAGAGAATTTTGAGCCACAGATATGTGATTTTGGGCTTGCAAAGTGGTTACCTGAACAGTGGACTCACTATAATGTATCAAAATTTGAAGGCACATTTGGTTATTTTGCTCCTGAATACTTCATGCACGGAATAGTAGATGAAAAAACTGATGTTTATTCATTTGGGGTCCTGCTTTTGGAGATCATAACCGGGCGCCATGCGGTGAATGATCAGCAGCAAAATATTTTGTCATGGGCAAAACCTTTGCTTGATGGCAATCATATGAAGGAGCTTATGGATCCTTCACTTGGTGATGATTACGATAAAGCACAGTTGGGTTGTGTAACTGTAACTGCATCATTATGTATTCAACAAAGTCCTATTTTACGCCCCAGAATGAGGCAGATTGTGACACTACTAAGAGGGGATCAACACGTTAAGAAAACACGAGCGAGTGGAAGGAGACTTCTGGAAAGAACGTACTCGGAAGAACTCTTGGATGTGCAAGAATACAACTCAACAAAATATCTAAGAGATCTCAAGCGGCATCAAGAAATTGCATTGGGTCTCCACACCTGA 1440 0.3951 MAKQTLAQCLWDQDQDNANKSKKVSDWDALNHKPEKKHFSCSSSAHDLRHLELEKEKENVASPRGVLEACMKDFDSRILAKPEKSCSSTRAHSNWTNFFKLFKKKSFKRLGTLSNISVPRIPKWKSRSTRENHVLSKLCNNFNSSWVTFNLSELRKATNNFDSENIIGRGGFAEVYKGCLEDGQLIAVKKLNKGTTEEKTAGFLSEIGVIAHVDHPNTAKLVGCCVEGEMHLVFELSKLGSLGTLLHGSDKSKLDWSKRYKIALGIADGLLYLHESCHRRIIHRDIKAENILVTENFEPQICDFGLAKWLPEQWTHYNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIITGRHAVNDQQQNILSWAKPLLDGNHMKELMDPSLGDDYDKAQLGCVTVTASLCIQQSPILRPRMRQIVTLLRGDQHVKKTRASGRRLLERTYSEELLDVQEYNSTKYLRDLKRHQEIALGLHT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02144 479 Pfam Protein tyrosine and serine/threonine kinase 164 425 IPR001245 GO:0004672|GO:0006468
Viun7g02144 479 SMART serkin_6 161 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g02144 479 ProSiteProfiles Protein kinase domain profile. 161 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g02144 479 Gene3D Transferase(Phosphotransferase) domain 1 238 448 - -
Viun7g02144 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Viun7g02144 479 Gene3D Phosphorylase Kinase; domain 1 122 235 - -
Viun7g02144 479 SUPERFAMILY Protein kinase-like (PK-like) 149 436 IPR011009 -
Viun7g02144 479 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 238 441 - -
Viun7g02144 479 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 137 236 - -
Viun7g02144 479 ProSitePatterns Protein kinases ATP-binding region signature. 167 190 IPR017441 GO:0005524
Viun7g02144 479 PANTHER OS08G0249100 PROTEIN 32 469 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02144 Viun-Chr7 26046854 26049973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02144 124 434 Receptor kinase-like Gene Family AT1G53420 42.138 1.32e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun7g02144 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02144 - - gmx:100781529 733.021