Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02127 ATGTGTTTGCCAGAGGGAGAGAGAGACAGAGAGAGAGCCATGGCACTGGAAGCAGTGGTGTTTCCACAATCACAAGACCCATTTGGTGGTTACGGGTCAGTGAAGGACTTCTACAACTGCACCTTCTTGGCTGCTACTTCACCTAACTGGGGGGACTATGAACACATCAACATCAACATCGACAAAGAAGAAGAACAAGGTTCCATCTCTACTTTTCTAGATAATAATAACAACAACCCTTATGGAGGAGATTGGACCAGCTCCTCCTCCTCTATCTTACCCCACTTCAATGAACTTCAAGAAACCACAGACCCCAGTAACACCACCTTAACCACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAAGAAATCGAGAACCAGAGAATGACTCACATTGCTGTGGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATCAACTTTGTGAAGGAGCTTGAGCAGAGGCTGCATTTTCTTGGTGCTCAGAAAGAAGGAGAGGCGAAATCTGATGCTGGTGGTGCAACGAACATGCCCTTTTCTGAGTTCTTCGCCTTTCCGCAGTATTCAACAAGTGGGGGTGGTGGTGGCTCTGAGAATTCTGCAACCGTAGGTGAAGACGTGGGTGAAGTTAAGTCTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGACCCAAGCAACTCTTGAAGTTGGTCTCTGGTTTGCATACTATGCGCCTCACAATCTTGCACCTAAACGTTACCACCACTGGTGAAGTTGTGCTCTACTCTCTAAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCCGTTGATGATATTGCTGAAGCCGTGTACCAGACGCTGGAGAGGATTGAGCAAGAGGCAGTGTTGAATTAA 999 0.4625 MCLPEGERDRERAMALEAVVFPQSQDPFGGYGSVKDFYNCTFLAATSPNWGDYEHININIDKEEEQGSISTFLDNNNNNPYGGDWTSSSSSILPHFNELQETTDPSNTTLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGEAKSDAGGATNMPFSEFFAFPQYSTSGGGGGSENSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAEAVYQTLERIEQEAVLN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02127 332 PANTHER MAX DIMERIZATION, MAD 91 329 - -
Viun7g02127 332 SMART finulus 136 187 IPR011598 GO:0046983
Viun7g02127 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 193 IPR036638 GO:0046983
Viun7g02127 332 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
Viun7g02127 332 CDD bHLH_AtFAMA_like 133 205 - -
Viun7g02127 332 MobiDBLite consensus disorder prediction 100 126 - -
Viun7g02127 332 Gene3D - 115 197 IPR036638 GO:0046983
Viun7g02127 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02127 Viun-Chr7 25978722 25980539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02127 14 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.875 7.51e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g02127 HLH 8.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02127 - - pvu:PHAVU_007G181900g 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02127 7 25978722 25980539 Viun7g02127 7 25978722 25980539 ECH
Viun6g01529 6 23376695 23378572 Viun7g02127 7 25978722 25980539 PCT