Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02093 ATGAGAGGGGGCTCAATGGCACCAACAAGGAAATCTAGAAGTGTTAATAAGCGGATTTCAAGTTCAAATGATCTTTCTCCTGAGAAAGATGGAGTTAGTTCAAACAAAAACAAGCAACGGAAAAAGTTGACTGATAAACTGGGATCTCAGTGGAGCAAGGAAGAATTAGAGAGATTTTATGAAGCATATAGAATGTATGGGAAAGACTGGAAGAAGGTGGCTAGTGTTGTACGAAATAGAACCACTGAAACGGTAGAAGCTCTTTACAATATGAATAGGGCATACCTCTCTCTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTCATAGCAATGATGACTGATCACTACAATGTCCTGGAAGAGAGTGACAGTGAAATGGAGAGCAATGATGCACTAGGATCTCGGAAATTTGTAAAACGAAAGCGGGAAAAAGTTCAGCTTAGTGTCTCTAAAGATCAGTCTCATTCAATTGCTGCCAGTGATGGTTGCCTCTCTTTATTGAAGAAGAGACGCTTAGATGGTATTGTGCCTCATGCTGTTGGTAAAAGGACTCCTCGCGTCCCAGTTTCTTATTCTTATAAGAAAGATTATACAGAAAATTATGTTTCGCCTTATAGAAGAAGCCTAAAGTCAACTACTGATGCTAATGATGATGAAGTTGCACATGTTGTAGCTTTGGCCTTAACTGAGGCTGCACAGAGAGGAGGGTCTCCCCAAGTTTCTCAATCACCATGTAGAAGAGCAGAAAAAAAACCCTCACCTGTCCAGCGTTGGGAAAGAAAGCAGCAACTGTCAGAGACAGCTCGTGCCAAGTTACACAATCTTTCAGTGGATGAAGAGTTATTAGACGGTAGTATAGAAAGCAGGGGAGCTGACAATGGAGAATATGCAAGAGATAATAGTTCATTGATAGATATGGAGGGCACAGGAACAGTTGAAGTTCTTCAGAAAGGGGGGAAAATTTACAGAAAGAAAGAGAGAGTGAAAAATGTTGGAAACCATCAGCTTGATGATGGCGGGGAAGCATGCAGCGGCACTGAAGAAGGGCTTAGTTGTTCACTAAAGGAAATGGTTGATATTGAGGTTACTAATGAAAAGCTTGAAAAAATCTCTCCAAAAGGTGGGAGGAAACGGAACAAGAAACTCTTCTTTGGAGATGAAACCCCTGCCTTGAATGCGTTGCAAACTTTGGCAGACCTGTCTCTAATGATGCCAATATCTACAATAGATTCTGAATCATCTATCCAATTGAAGGGAGACAGGATTTCTACTGATAAAGATGGTAAGTCTGCTCTACCTGAAGGAACATTAACAAGCCATAAGAGACATAAACATAAACACAGTGTAGTGCCTGAAATTGAGGTTTCAACCTCCAAAAAGTCCAAGCTTGGAAAGGAATCAACAAAGGATACTAGCGTGCTTTCTGAATCAAAAGAACAACTTCCTTTTGCTGATGCAACATGGAAAAGAAAACGGAAGTCTGTGGTTTCGAAGGTTGCAAATGCAAAGCTTGATTCTTGTCCAACTGGTCCCTTGAAAGATGAGGCTTTAGATGACGAGAAAAAACCAGTAGTTAAAGGAAAACATGGTGATCAGGTTTTTACCCTACCAAAGCAATTGAAGACCGTTAAATCATCAGAGAGTTCCTTGTGTATTGATCAGAAAGATTTGACAGTACCAGTGGTGGAGACTCCACTTCTGAACGAAGTTAGTTTACCAACTAAACGAAGTAGACGGAAGATGAATTTACAGAGAACTTCCTCTGCTAAGGAAAAGTCTTCTGATTCCATATTGAAAAGTCAAGCTAACAAGCACTCTGCTCTAAAGGAAAAGCTTTCTAGTTGCTTGTCATCTAATATGGTTCGCAGATGGTTTATGTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTGATGGAATACTTAAATCATGTCGGACTAGGGAATATCCCAAGGTTAACTCGTGTTGAGTGGAGTGTTGTTAGAGGTTCCCTTGGCAAACCTCGGCGGCTTTCTGAACATTTTCTTCGTGATGAAAGGCAAAAACTTGCAGAGTATCGGGAATCAGTGAGAAAGCATTATGCTGAACTGCGGACTGGTATTAGGGATGGACTTCCAACTGATTTAGCTAGACCATTATGTGTTGGACAGAGAGTAATTGCTGTTCATCCAAAAACAAGAGAGATTCATGATGGTAGCGTGCTTACTGTTGATTATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGTGTTGAGTTTGTAATGGACATTGATTGTATGCCTTTCAATCCATTAGATAATATGCCAGAAGCTCTGAGGAGGCATATTGATGACAGAAAAGGATCTTTTATGCCTATAGAGCCACATATTAATGGAAATTCAAATTTTGGGGGGTGCGAAAATCATTCCTCACCTTTGAAGGTACATACTTCATCAAGTGCTTTAGTAATGCATGGAAAGGCTATGGTTGCTACCGTCGATAACTTCTGTGCACAAGCAGGTTGTGTTCAACCATGTAAAGTAACACACCATCAAGCTAGGGAAGCTGACATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACATTGTTGATGGAACTTCGAAGTTCAAATAGCGATATATTGGAAAACCAAAATGGCATAGAATGCTTAAACGATTCTGAGGTTTTCAAGAAGCATTATGCCACGGTACTGGTAGAGCTAAAGGAAGCCAGTGGGCAGGTTTCTGATGCAATGTTACAACTGAGGCAGCGCAATACCTACAGAGGAAACTCTCTGCCACCATGGATGAAGCCACAAGCAGGTTTTAGTGTTCATGACGATCTTCCCAATATGTTGGATGGTTCTCTTACACAAGAGATTGGGTCAACTGTTGTTCAAATTATTAAAGGATCCAGGTCAAGGGCACATGCAATGGTAGATGCTGCATTTAAGGCATTGTCTTTGACAAAGGAAGGTGAAGATGCTTTCGTGAAGATTGGGCAAGCATTGGATTCTATTAATCATCAGCAGTTGGCCTCCAAGTCTAGGTTACCTGTGATCAGGTCTCAAGAGCAAGTGAACGCAAATGGCAGTTTCTATCACGTTAATAATTCAACTTGCAGTGTATCAGAGTCTATACTTAATGATCCATCTGGTGCAAAACTACATAATTATTCTGACAAATTTGATACTGAACTTCCATCAGATCTTATCACTTCATGTGTTGCTACATTAATCATGATTCAGACTTGTACTGAACGGCAATACCCTCCAGCTGACGTGGCTCAGATATTAGATTCTGCAGTTAGCAGCTTGCATCCATGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAAACACAGATTTTAGCTCTGATTCCTACTTGA 3429 0.4071 MRGGSMAPTRKSRSVNKRISSSNDLSPEKDGVSSNKNKQRKKLTDKLGSQWSKEELERFYEAYRMYGKDWKKVASVVRNRTTETVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEMESNDALGSRKFVKRKREKVQLSVSKDQSHSIAASDGCLSLLKKRRLDGIVPHAVGKRTPRVPVSYSYKKDYTENYVSPYRRSLKSTTDANDDEVAHVVALALTEAAQRGGSPQVSQSPCRRAEKKPSPVQRWERKQQLSETARAKLHNLSVDEELLDGSIESRGADNGEYARDNSSLIDMEGTGTVEVLQKGGKIYRKKERVKNVGNHQLDDGGEACSGTEEGLSCSLKEMVDIEVTNEKLEKISPKGGRKRNKKLFFGDETPALNALQTLADLSLMMPISTIDSESSIQLKGDRISTDKDGKSALPEGTLTSHKRHKHKHSVVPEIEVSTSKKSKLGKESTKDTSVLSESKEQLPFADATWKRKRKSVVSKVANAKLDSCPTGPLKDEALDDEKKPVVKGKHGDQVFTLPKQLKTVKSSESSLCIDQKDLTVPVVETPLLNEVSLPTKRSRRKMNLQRTSSAKEKSSDSILKSQANKHSALKEKLSSCLSSNMVRRWFMFEWFYSAIDYPWFAKRELMEYLNHVGLGNIPRLTRVEWSVVRGSLGKPRRLSEHFLRDERQKLAEYRESVRKHYAELRTGIRDGLPTDLARPLCVGQRVIAVHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPFNPLDNMPEALRRHIDDRKGSFMPIEPHINGNSNFGGCENHSSPLKVHTSSSALVMHGKAMVATVDNFCAQAGCVQPCKVTHHQAREADIHALSELKRALDKKETLLMELRSSNSDILENQNGIECLNDSEVFKKHYATVLVELKEASGQVSDAMLQLRQRNTYRGNSLPPWMKPQAGFSVHDDLPNMLDGSLTQEIGSTVVQIIKGSRSRAHAMVDAAFKALSLTKEGEDAFVKIGQALDSINHQQLASKSRLPVIRSQEQVNANGSFYHVNNSTCSVSESILNDPSGAKLHNYSDKFDTELPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVSSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02093 1142 FunFam Protein ALWAYS EARLY 3 isoform A 8 103 - -
Viun7g02093 1142 SMART DIRP_2 630 731 IPR033471 -
Viun7g02093 1142 ProSiteProfiles SANT domain profile. 46 83 IPR017884 -
Viun7g02093 1142 MobiDBLite consensus disorder prediction 1 47 - -
Viun7g02093 1142 MobiDBLite consensus disorder prediction 573 600 - -
Viun7g02093 1142 MobiDBLite consensus disorder prediction 9 30 - -
Viun7g02093 1142 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 81 IPR017930 -
Viun7g02093 1142 Pfam DIRP 629 730 IPR033471 -
Viun7g02093 1142 CDD SANT 51 81 IPR001005 -
Viun7g02093 1142 MobiDBLite consensus disorder prediction 413 474 - -
Viun7g02093 1142 MobiDBLite consensus disorder prediction 232 263 - -
Viun7g02093 1142 Coils Coil 682 702 - -
Viun7g02093 1142 Gene3D - 5 103 - -
Viun7g02093 1142 MobiDBLite consensus disorder prediction 31 47 - -
Viun7g02093 1142 ProSiteProfiles Myb-like domain profile. 49 90 IPR001005 -
Viun7g02093 1142 PANTHER LIN-9 6 1142 IPR010561 GO:0006351|GO:0017053
Viun7g02093 1142 Pfam Myb-like DNA-binding domain 49 85 IPR001005 -
Viun7g02093 1142 SUPERFAMILY Homeodomain-like 46 94 IPR009057 -
Viun7g02093 1142 Coils Coil 862 882 - -
Viun7g02093 1142 MobiDBLite consensus disorder prediction 448 473 - -
Viun7g02093 1142 SMART sant 47 95 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02093 Viun-Chr7 25740814 25754522 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun7g02093 DIRP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02093 - - gmx:100816217 1840.47