Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02092 ATGTTCGGGGCTGGGACGAGTAGAGGGCAGGGGAGCGGTGAGCCGGTGGGACCCGTTTTGGTTTCGAGGCGTTTTGTTTGGCCTCACGGTGGAAGAATGGTGTTTCTAACAGGTTCCTTCACGAGATGGCAGGCAATTGTACCTATGTCACCCAGGGAAGGATGTCCGACTGAATTTGAAGTTATTTGCGCCTTAACGCCTGGATATCATAAGTACAAATTTAATGTAGATGGTGAGTGGCGGCATGATGCGCATCAGCCATTTGTATATGGGGACGATGGGATATTTAATATTTTTTATGTAGGGAGACAACCAGTTATTTTTCCTCCTATCTTAAGTGCTGAAACACCTGGTCGATCCCACATGGAGGTTGACAACGATGTCGTTGGGCATGTGGAAGCTAAACCCAGGATGTCAGAGTCTGATCTGCAGGTCTCACAACATCGTATTTCGGTTTTCTTGTCTACACATACTGCTTATGAGTTGCTTCCCGAGTCAGGCAAGGTTGTTGCCTTGGATACAACTTTACCAGTTAAGCAAGCATTCCATACTCTTTATCAAGAAGGAATATCTACAGCTCCTGTGTGGGATTCTAGCAAGTGCCAGTTTGTTGGAATGCTTAGTGCTATGGACTTCATTTTAATACTAAAAGAGTTGGGGATTCATGAAACAAACATGACTGAAGAACAACTTGAGACACATACTATAGCAGCATGGAGAGAGGCAAAGGAACAAGAAGGCGCAATTGATAGCAGAGGGAAAAAATACCCTCAACATTTAGTTCATGCTGGGCCCCTTGAGTGTCTAAAAGATGTTGCTTTAAAAATTTTGCAAAACAAGGTGGCAACAGTTCCTATTATCCATTCCTCTTCAGAGGATGGTTCATTTCCTCAGCTGCTACACCTTGCTTCCCTCTCAGAAATACTAAAATGTATATGCAGGCATTTTAAGCACTCTTGGGATTCCTTGCCAATTCTTCAGCTACCAATTAGTATGTTACCTATAGGTACATGGGTGTCAAAATTGGGGGAATCCAATAAACAGCCACTTGCTATGCTATGGCCACATGCTTCTCTTAGTGAAGCTCTGTCTCTGTTGATTCAAGCTGGAATTAGCTCCATACCAATTGTGGATATTAATTATTCATTACAAGATATCTATTCTAGAAGGGACATTATTGCCTTGGTTAGAGATAAAATTTATGCAAGGATAGATCTGCATGGGTTTAGTATCCATCAGGCATTGCTTTTGGGACGAGATGCAGGTTTTCCCAGCGGGCTCCCGAATGGGCCGAGATGTCATATGTGTTTGAGATCTGATTCATTATACCAAGTGATGGAGCGGTTGACAGACCCTGGTGTTAGAAGACTGGTGGTTGTGGAGGCGGGTACCCTGCGTGTGGAAGGTATCATTTCCATTGGTGACATCTTCAGATTCTTGTTATGCTGCTAG 1452 0.4373 MFGAGTSRGQGSGEPVGPVLVSRRFVWPHGGRMVFLTGSFTRWQAIVPMSPREGCPTEFEVICALTPGYHKYKFNVDGEWRHDAHQPFVYGDDGIFNIFYVGRQPVIFPPILSAETPGRSHMEVDNDVVGHVEAKPRMSESDLQVSQHRISVFLSTHTAYELLPESGKVVALDTTLPVKQAFHTLYQEGISTAPVWDSSKCQFVGMLSAMDFILILKELGIHETNMTEEQLETHTIAAWREAKEQEGAIDSRGKKYPQHLVHAGPLECLKDVALKILQNKVATVPIIHSSSEDGSFPQLLHLASLSEILKCICRHFKHSWDSLPILQLPISMLPIGTWVSKLGESNKQPLAMLWPHASLSEALSLLIQAGISSIPIVDINYSLQDIYSRRDIIALVRDKIYARIDLHGFSIHQALLLGRDAGFPSGLPNGPRCHMCLRSDSLYQVMERLTDPGVRRLVVVEAGTLRVEGIISIGDIFRFLLCC 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02092 483 Gene3D - 139 321 IPR046342 -
Viun7g02092 483 SUPERFAMILY E set domains 22 97 IPR014756 -
Viun7g02092 483 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 140 480 - -
Viun7g02092 483 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
Viun7g02092 483 Gene3D - 328 483 IPR046342 -
Viun7g02092 483 SUPERFAMILY CBS-domain pair 348 481 IPR046342 -
Viun7g02092 483 Pfam CBS domain 433 481 IPR000644 -
Viun7g02092 483 Pfam CBS domain 349 395 IPR000644 -
Viun7g02092 483 ProSiteProfiles CBS domain profile. 345 406 IPR000644 -
Viun7g02092 483 SUPERFAMILY CBS-domain pair 148 321 IPR046342 -
Viun7g02092 483 SMART cbs_1 432 481 IPR000644 -
Viun7g02092 483 SMART cbs_1 168 217 IPR000644 -
Viun7g02092 483 SMART cbs_1 349 397 IPR000644 -
Viun7g02092 483 CDD E_set_AMPKbeta_like_N 24 97 - -
Viun7g02092 483 Gene3D Immunoglobulins 19 101 IPR013783 -
Viun7g02092 483 FunFam Sucrose nonfermenting 4-like protein 18 102 - -
Viun7g02092 483 Pfam Glycogen recognition site of AMP-activated protein kinase 23 97 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02092 Viun-Chr7 25726439 25736128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02092 9 111 Protein tyrosine phosphatase (PTP) family AT3G01510 34.906 6.23e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02092 - - gmx:100790062 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02092 7 25726439 25736128 Viun7g02092 7 25726439 25736128 ECH
Viun6g01494 6 23176893 23184208 Viun7g02092 7 25726439 25736128 PCT