Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02085 ATGTCAAACATCACAAGTTGTGATAGCGGGAGCTTCTCCACAGAGAATACCAGAGAAGATGCAGCAGCAGTTAAACACCAACCTGAGATGCTTCCTCAGTTTCATAGTCCACATTCTCTTACTTCAACCACAACAACAACAAATAACACCAATGCTTCCAACACAATTTCACAACCTCCTCCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTAATAGCATTATCACCAAACACATTAATGGCAACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTGCAGTTGCACCGGCGAGGCCACAACCTGCCATGGAAGCTGAAGCAGAGAACAAGCACAGAGGTTCGGAAGAGGGTTTATGTTTGTCCAGAACCTTCGTGTGTCCACCACAACCCTGCAAGAGCACTGGGTGACCTCACCGGCATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAGTGTGACTGTGGTACCATTTTTTCAAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTAGCTGAAGAGAACAACAAAGCCAACGAAGGACAAATACCAAAGATAGGTTCAAACCTGCAATGTCAACAGATTCCGAACCTTGTTTCTTCATTACCGATCAACACCAACGTTGTTCCCAACCCACAACAAATCGGTGGCACCTCGGAGTTCAACCGTGGTGAACAGAAGCACCCACTGTCACTCCCACACGAGCTAATGCCAATGCCTGCACCAAAACCCTTCAACAACAACACCGCCATGGCAGGAACAGTGTTCTCCAGAAGCCTCTCGTCAACCTCTTCGCCGTCTCTCCAACTGAGTTCGAACATATTCGAGGAAAACGGGCCCCACCTGGCTGCAGGGTCGCCACACATGTCAGCCACCGCGCTGCTGCAAAAAGCTGCGCAAATGGGAGCAACGGTGACGGAGAAAAGTTTTAGCACAAACATGGCACCGCCGTCGTTTGGGGTGCTGCAGCAGCAGCAGCCGAATGGACAATCCTTCATGAACCAGTACATGCACAGTGGGCAACACCAACAGGATCCGAACGTTAACATCTCCGCTCAGTATAACGGTTTCGGCGGAAATGGGATGAGTGGAGGGAGCGTTGGAATGAACGGTGTGGACATGTTCAACGCTATCTTGGACCAAAGCAAGGCTTTGTCAAAGATCATAGAGCAAAGCAACAGAAGCAGTAGTGGAGGTGCAACAAATGGAGGTTCAAGTGCTGCTATTAACGTCGCTGGAAGTAAAGGAAGTGAGGATGTGATGACTCTGGACTTTTTGGGAATAGGAGGTGGCGGCGGCGGCGGCGGTGCGCAAGGAAACTTCTATGGTAGTGCTCAGCAAGCAGAAAACGGTGCAGCGGATGAGGTTTGGAGAAACTGGTCAAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1578 0.4835 MSNITSCDSGSFSTENTREDAAAVKHQPEMLPQFHSPHSLTSTTTTTNNTNASNTISQPPPPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQIPKIGSNLQCQQIPNLVSSLPINTNVVPNPQQIGGTSEFNRGEQKHPLSLPHELMPMPAPKPFNNNTAMAGTVFSRSLSSTSSPSLQLSSNIFEENGPHLAAGSPHMSATALLQKAAQMGATVTEKSFSTNMAPPSFGVLQQQQPNGQSFMNQYMHSGQHQQDPNVNISAQYNGFGGNGMSGGSVGMNGVDMFNAILDQSKALSKIIEQSNRSSSGGATNGGSSAAINVAGSKGSEDVMTLDFLGIGGGGGGGGAQGNFYGSAQQAENGAADEVWRNWSSKNAGFESFSATSSI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02085 525 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Viun7g02085 525 Gene3D Classic Zinc Finger 72 139 - -
Viun7g02085 525 FunFam protein indeterminate-domain 12-like 72 140 - -
Viun7g02085 525 MobiDBLite consensus disorder prediction 34 61 - -
Viun7g02085 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Viun7g02085 525 Gene3D Classic Zinc Finger 148 227 - -
Viun7g02085 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 493 IPR031140 -
Viun7g02085 525 SMART c2h2final6 134 164 IPR013087 -
Viun7g02085 525 SMART c2h2final6 93 115 IPR013087 -
Viun7g02085 525 SMART c2h2final6 169 189 IPR013087 -
Viun7g02085 525 MobiDBLite consensus disorder prediction 1 78 - -
Viun7g02085 525 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Viun7g02085 525 FunFam protein indeterminate-domain 5, chloroplastic-like 147 226 - -
Viun7g02085 525 MobiDBLite consensus disorder prediction 1 18 - -
Viun7g02085 525 Pfam Zinc-finger double-stranded RNA-binding 93 115 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02085 Viun-Chr7 25638466 25642351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02085 41 352 IDZ Gene Family AT3G50700 54.867 5.65e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g02085 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02085 - - gmx:100813556 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01490 6 23128180 23131854 Viun7g02085 7 25638466 25642351 ECH
Viun7g02085 7 25638466 25642351 Viun7g02085 7 25638466 25642351 ECH
Viun1g02038 1 31744399 31748446 Viun7g02085 7 25638466 25642351 PCT
Viun6g01490 6 23128180 23131854 Viun7g02085 7 25638466 25642351 PCT