Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02082 ATGGATCACGCGCGATCGACCAACGGCGAGGACAATGCGGCGGGAATTCCGGACGACTTGCGGTGCAAGAGGTCTGACGGAAAGCAGTGGCGGTGCACGGCCATGTCGATGCCGGATAAGACGGTGTGCGAGAAACACTACATCCAGGCTAAGAAGCGCGCCGCGAATTCCGCAATGAGGGCCAACCTCAAGAAAGCCAAGAGGAAGTCGCAGTCGCTGAACGAGTCTGATGTTTATTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTCTCCGCTATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAACCAGTTTCGTTACACGCCCGAGCGTGACGGGCGAAGAGGCTCCTATGCGAGACACGCCCATGACGAGGTGGACATGGATGCGGATGCGGATGCGGATGTGGATGTGGATGTGGATGCGGATGCGGATGCGGATGCGGATGCGGATGTGGATGCGGATGTGGATGCGGATGCGGATGTGGATGTGGATGGGGATATGGACGCGGATGCAGATGCTGATGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCTCTTATGATTCCCCACCGGACTCCTCGCGCAAGAGATCGCGAAGGAGCTTGGATGCTAATGCCACTACTGAATATTCCGATGGAACCTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAATGACCGAGATAGAGTTACTTGGTGCTTAAAATGTGACCGGAGGGGATACTGTGATAGCTGTATATCAGCATGGTACTCGGACATTTCGTTGGATGATATACAGAGGATATGTCCTGCTTGCCGCGGTATATGTAACTGCAAGACTTGCTTGCGGAGTGATAATTCTATCAAGGTTCGGATACGCGAGATACCTGTTCTGGATAAGTTACAGTACCTCCATGTGTTGCTATCTTCGGTTCTTCCGGTGGTAAAGCAGATCCACCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGAATAAAATTCAACACGGATGAACAGATGTGTTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGACGTTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCACAATAAAGAACCTCAGACAGAGTTAGCTAAAACTTGTGATCAAAATATTTTAAGTAAATTTCCTCATTGGACATCCAATGACAATGGAAGTATTCCATGTCCTCCTAAGGAGTATGGTGGCTGCGGTCATTCTTCATTAAACTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTGATGCCGATGGTCCACCGGAAACTGGCCTGAATGGTCTCAGACTGTGCCAATGTTCTCATAGAGAAGCCAGTGATGATAATTATCTTTATTGTCCAGCATCTGACGATATAAAAAATGATGGGATTGGAAAATTTAGAAAGCACTGGAAAACTGGTGAGCCCATTATTGTTAAGAAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGGGGGGTTCAAGAGACAACAGATGAAAAAGCAAAAGATGAAAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATCGAGCTTGCTCAGTTCATGAAAGGATACTTCGAAGGGCGTGTTCATGAAAATGGTTGGCCACAGTTATTAAAATTGAAGGATTGGCCTTCACCTAGCGCATCTGAAGAATTTCTATTGTATCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATAGCTTATGGAATTAGCAATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCACTTCAATATTCGTGACATGGTATACCTTTTGGTTCATACAAATGAAGTAAAGTTAAAGGACTGGCAGAGAACTAAAATTGAAATTATACAAAAGGCTAAAGCTGATGAGGAATCTGAAGCGAAAGAGTCACATGGAGATCCTCAAATATTTTCAAGGGGGAGTTCACTTGATTCATCACTTGGCACAAAAAGTAGTGGACTTGACATGGATTCAAACCAGAATAAGTCAATTATGGATCAAGAATTTGAAATTTATTCTAGTGCTGAAGGTAATATGGTCAATTGTAAGCTCCCGTCTACACAAAATGGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTACCAATATTGACTAAATATTTGAAAATACATTGGAAGGAATTGGGGAAGTCAGATGATGTGGGAAATGAATTTGTTGCATGGCCTCTTTATGGTGGAACTATTTTTCTCGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCGAATGTTCAGCTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGCGATGCTGTACGATTGACAGAGGAAATTCGATGTCTACCGAATGAACATGAATCAAAAGTTCAAGTATTGGAGGTGGGGAAGATATCTCTCTATGCAGCAAGTTCTGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCAAAAACTTGGTGCCGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2907 0.4407 MDHARSTNGEDNAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLNESDVYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDGRRGSYARHAHDEVDMDADADADVDVDVDADADADADADVDADVDADADVDVDGDMDADADADADVALYEEDNWVSYDSPPDSSRKRSRRSLDANATTEYSDGTSGSSEDTGGQTCHQCRRNDRDRVTWCLKCDRRGYCDSCISAWYSDISLDDIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRIKFNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADHNKEPQTELAKTCDQNILSKFPHWTSNDNGSIPCPPKEYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISDADGPPETGLNGLRLCQCSHREASDDNYLYCPASDDIKNDGIGKFRKHWKTGEPIIVKKVFDGSSISSWDPMVIWRGVQETTDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGRVHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYIAYGISNELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKDWQRTKIEIIQKAKADEESEAKESHGDPQIFSRGSSLDSSLGTKSSGLDMDSNQNKSIMDQEFEIYSSAEGNMVNCKLPSTQNGDVSEKTHPGVLWDVFRRQDVPILTKYLKIHWKELGKSDDVGNEFVAWPLYGGTIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEIRCLPNEHESKVQVLEVGKISLYAASSAIKEVQKLVLDQKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02082 968 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Viun7g02082 968 MobiDBLite consensus disorder prediction 1 20 - -
Viun7g02082 968 MobiDBLite consensus disorder prediction 55 75 - -
Viun7g02082 968 MobiDBLite consensus disorder prediction 704 744 - -
Viun7g02082 968 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 224 289 IPR018866 -
Viun7g02082 968 MobiDBLite consensus disorder prediction 184 231 - -
Viun7g02082 968 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 933 IPR045109 GO:0032454|GO:0033169
Viun7g02082 968 Gene3D Cupin 489 907 - -
Viun7g02082 968 Coils Coil 56 76 - -
Viun7g02082 968 ProSiteProfiles Zinc finger RING-type profile. 229 276 IPR001841 -
Viun7g02082 968 MobiDBLite consensus disorder prediction 146 171 - -
Viun7g02082 968 ProSiteProfiles JmjC domain profile. 602 898 IPR003347 -
Viun7g02082 968 MobiDBLite consensus disorder prediction 720 744 - -
Viun7g02082 968 Pfam JmjC domain, hydroxylase 830 877 IPR003347 -
Viun7g02082 968 MobiDBLite consensus disorder prediction 704 718 - -
Viun7g02082 968 MobiDBLite consensus disorder prediction 207 228 - -
Viun7g02082 968 Pfam WRC 17 57 IPR014977 -
Viun7g02082 968 SMART cupin_9 609 898 IPR003347 -
Viun7g02082 968 SUPERFAMILY Clavaminate synthase-like 511 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02082 Viun-Chr7 25626018 25633096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02082 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.30e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun7g02082 JmjC 1.4e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02082 K15601 - gmx:100792166 1652.88