Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02081 ATGGCGGAAACCAAGTTGAAAGAAACAGTTCAGGAAGAAGAAGAAAAAGAAGAAGAAGCAGATAACCAAAGCTTCGAAGAACTCGGCGTGGACGCTCGTCTCCTTCGCGCCTTACAAAAGAAAGGGATAGAGAAACCAACTCCAATTCAAGGCGTCGCGATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCAGGAAAGACCTTAGCGTATCTTCTCCCGTTGCTTCAGAAACTGTTTACCGTTAGTGCTGATCGGAAGAAGCTTGCGCCCAATGCTATTGTTCTTGTCCCTACTCGCGAACTGTGTCAACAGGTGTATGCGGAAGTGTTGTCGCTGGTTGAGTTATGCAGAGTTAAACTGAAAGTTGTGCAGCTGAATAGCAACATGCTTGCTAATGACTTGCGGGCAGCATTGGCCGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCGTAGCGAAGTGTTTGTCCGGTGGCATACTTAAGGCGGCATCCATTAACGAATCCCTTGAAACTCTTGTTCTTGATGAGGCAGATCTTCTTCTATCATATGGGTATGAGAATGATATAAAAGCTTTTACACCTCATGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCGGATGTTGACAAACTAAAGAAGCTGATTCTACACAACCCATCTGTTTTGACTTTGAGTGAAATGGGAAATAATAAGGATGAGATCATTCCTAAAAATGTTCAGCAGTTTTGGATCTCATGTTCTGCCAGTGATAAGTTACTTTACATCCTTGCTGTATTGAAGTTGGGATTGGTCCAAAAGAAAGTTCTGATATTCACTAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTCCATATTCTGGAGGAATTCAATGCGGGCCTATTTGATTATCTAATTGCAACAGATCTTAGTCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTAATGCCATATCGCGGAAGTCTAGAAAACGTGCTAAAGCAAAATTAGATTCTGAATTCGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCAAAATGTTGAGGGATATGTACATCGAATTGGACGTACAGGAAGAGCATATAATTCTGGTACTTCTGTCTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAAAAATAAGATCATTTGTTGGGGATGACGAAAACAAAGGCACAAGTTCTATTGCCGAGTTTCCCCTTCTCACCAAGAACGCTGTTGAATCGTTACGGTATAGGGCAGAGGATGTTGCCAAGAGTGTAACCAGAATTGCAGTCCGAGAATCACGAGCGCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCATTTTGAGACTAATCCAAAAGACCTAGATCTACTGAAGCACGACAAAGTTTTGAGCAAGAATGCTCCGCCTCCGCACCTGCGTGATGTGCCTGACTACCTATTAGACAAACAAACGAAAGAGGCAAGGGAAATGGTCAAACTTGCGAGGGATGCAATGGGAAATAATAATCGCCGCAAAGGATCCAAGAGAAAATTAAGAAAAGATGGAGACCCTCTGAAGGCTATCTCCGCTTTGGCATCAAAAAGACCGCACAAAGTTAGGAAGACTGGTGGAAGCGATGGCAACAATAGCAGTGATAGACATAAACGCAAAAACAAGGGCTTATGA 1803 0.4254 MAETKLKETVQEEEEKEEEADNQSFEELGVDARLLRALQKKGIEKPTPIQGVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTVSADRKKLAPNAIVLVPTRELCQQVYAEVLSLVELCRVKLKVVQLNSNMLANDLRAALAGPPDILISTPACVAKCLSGGILKAASINESLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPSVLTLSEMGNNKDEIIPKNVQQFWISCSASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNAISRKSRKRAKAKLDSEFGVVRGIDFKNVFTVINFEMPQNVEGYVHRIGRTGRAYNSGTSVSLVSPDEMDTLEKIRSFVGDDENKGTSSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKQTKEAREMVKLARDAMGNNNRRKGSKRKLRKDGDPLKAISALASKRPHKVRKTGGSDGNNSSDRHKRKNKGL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02081 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 431 IPR027417 -
Viun7g02081 600 Gene3D - 1 238 IPR027417 -
Viun7g02081 600 SMART ultradead3 42 255 IPR014001 -
Viun7g02081 600 CDD SF2_C_DEAD 252 415 - -
Viun7g02081 600 Gene3D - 239 445 IPR027417 -
Viun7g02081 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 23 51 IPR014014 GO:0003724
Viun7g02081 600 PANTHER RNA HELICASE 11 528 - -
Viun7g02081 600 SMART helicmild6 292 406 IPR001650 -
Viun7g02081 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 270 452 IPR001650 -
Viun7g02081 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 235 IPR027417 -
Viun7g02081 600 MobiDBLite consensus disorder prediction 578 594 - -
Viun7g02081 600 Pfam Helicase conserved C-terminal domain 263 406 IPR001650 -
Viun7g02081 600 MobiDBLite consensus disorder prediction 542 600 - -
Viun7g02081 600 Coils Coil 476 496 - -
Viun7g02081 600 CDD DEADc_DDX56 30 237 - -
Viun7g02081 600 Coils Coil 3 26 - -
Viun7g02081 600 MobiDBLite consensus disorder prediction 1 25 - -
Viun7g02081 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 235 IPR014001 -
Viun7g02081 600 Pfam DEAD/DEAH box helicase 47 224 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02081 Viun-Chr7 25611512 25619297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02081 3 446 Eukaryotic Initiation Factors Gene Family AT3G13920 27.333 2.12e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02081 K14810 - gmx:100800749 1009.21