Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02078 ATGGGAAGGAATGCGATGGATGGGAACAACACATGTTGGGACAAAGTGATTGCAGAAATGATTGAAATGGGTTTCGAGTATTCGAGCATAGTGGAAGCCATTAAAGTAGTAGGTCCATCTATTCCCAGCGCTGTGGAACACATTCTCAATTCTACTACTGAAGAAGCATCCACTACCCACACCTCCAATTCGCATGCCCGCAATGGGAATGCTCTCAAAAAACGACCTTTGCGCACGTCTTTGGTTCGACAATCCAATATATACGACCATTTCCATTCCAATGACGATGTCAAAGAACACAAAAAGGAACTCCCTCAATTGGGAATTAATCCCAATCCCGTTGTGCTTTTAGAGCCTTTGGAAGCGCAAGATTTGGATGCTGAATCTGATTGGGAGCAGAAGATTAGGAATCTGATGAAAAAGCATTTTGGTTTTTCATCCTTGAAGAGTTTTCAGAAGGAAGCCCTCTCTGCTTGGGTTGCTCATAAAGACTGTCTTGTCCTTGCTGCAACAGGATCCGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTGTCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTAACTAGACATGGGATCAGTGCGTGCTTTCTTGGCTCCGGGCAACCAGATAATACCGTTGAACAGAAAGCGATGAGAGGATTGTATAGTATAGTGTATATTTGCCCAGAGACTGTTCTAAGATTGATTCAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCTTTATTTGCAATTGACGAGGTACACTGTGTTTCGAAATGGGGTCATGATTTTCGTCCAGATTACAGGCGACTGTCTGTGCTGAGAGAAAATTTTAGTACAAGCAAGCTAAAATCCCTAAAATTTGATATACCTCTGATGGCCTTAACAGCTACAGCTACAAAAAGAGTACGAGAAGACATTTTAAAATCATTGCACATGTCAAAAGAAACGAAAGTTTGTCTTACATCATTTTTTAGACCTAACTTACGATTCATGGTAAAACATAGTCGAGTATCACAGGCTTCTTATGCAAAAGATTTTCATGAATTGATTCATGTATATGGTAGAAAGAAAAATATTGATGAAAATGAAAAGGTTTTCATCTCAGATGATTCAGATCAGTTTTCTAATAGCTCCGATGCTAGTAGTATCTCTGATACAGACAGTGTTTCACCTGATGACATGGACGACAACCAAGATGATTATGCTTTTAGAGATATTAATATAATGCACTCAGGAAACTCTGATGGCTTTTTAACTGGAAAAGAACTGTCAATTGAATTCCTGGAAAATGATATCGATGCCTTTCAAAGTGTGGATAACTTAGATGTTACCCGTGATGACTTCTGTGTGCTACCTCACAAGGAATTGGAATTATCCAAGAACACTGACACACCTAAGAAACCAGAAGGAAGAGTAAAAATTCTTAACGAGCCTTTGGAACAAGGACCAACAATTATATATGTACCTACCAGAAAAGAAACTCTAAGAATTGCGAAGTACCTATGCAAGCTTGGTGTGAAGGCAGCTGCTTATAATGCAGGGCTTCCCAAATTGCATCTAAGAAAGGTTCATAAAGAGTTTCACGAAAATAGTTTAGAGGTTATTGTTGCTACAATAGCTTTTGGAATGGGTATTGACAAACCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCATACTACCAAGAAGCTGGTCGGGCTGGTCGAGATGGGAAATTATCAGATTGCATTCTGTATGCAAACCTAGCAAGCAAGCCATCACTTTTGCCTAGTCGAAGAAGTGAAGATCAGAAAAAACAAGCATATATTATGTTATCTGATTGTTTCAGATATGGAATGAATACTTCCTGCTGTCGAGCAAAGATACTCGTCGAATACTTTGGAGAGGATTTCAGTCATCAGAAATGTCACTTATGTGATGTGTGCATTGATGGTCCACCTAAAAAGCAGAATCTAAAAGAGGAAGCCTGTATTTTGCTGCAAACTATAGGTTCCCATAATCAGTGGCGTAGGGATTCCAAGGATTACTCATATGATGATGATATACATTTTGAGTACAATTACAGAGGACAAAGAGAGAGGCCAAATCTTAGGATGTTGGTTGGAAAAATAAGGCAGCAGTTTCAAAAGTTTTCAATCACTGACATGCTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGAGAAGGAGATGACAAGAGGTATGTTCAGGCAAAATTCCCGGAATTTGTGAGGTCCATGAATGAGGAAGCTTTCTGGGTTTACCCTGAAGCAGATATGTTGCTTGCAAGAAAATTAACTGAGAAACCATTTTCCTCATTCTCAGAATGGGGAAAGGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTACAAAGAATGGGAGTGAATAGAAAGTCAGTGAAAAGGAAACGAAAGGGAAAAGTGCAACATGATTTGAGGACTTCTCGTGGCAGACTAACAGCAAAACTCTCAAAACATAAGTGA 2565 0.4019 MGRNAMDGNNTCWDKVIAEMIEMGFEYSSIVEAIKVVGPSIPSAVEHILNSTTEEASTTHTSNSHARNGNALKKRPLRTSLVRQSNIYDHFHSNDDVKEHKKELPQLGINPNPVVLLEPLEAQDLDAESDWEQKIRNLMKKHFGFSSLKSFQKEALSAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTRHGISACFLGSGQPDNTVEQKAMRGLYSIVYICPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLHMSKETKVCLTSFFRPNLRFMVKHSRVSQASYAKDFHELIHVYGRKKNIDENEKVFISDDSDQFSNSSDASSISDTDSVSPDDMDDNQDDYAFRDINIMHSGNSDGFLTGKELSIEFLENDIDAFQSVDNLDVTRDDFCVLPHKELELSKNTDTPKKPEGRVKILNEPLEQGPTIIYVPTRKETLRIAKYLCKLGVKAAAYNAGLPKLHLRKVHKEFHENSLEVIVATIAFGMGIDKPNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLSDCILYANLASKPSLLPSRRSEDQKKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFSHQKCHLCDVCIDGPPKKQNLKEEACILLQTIGSHNQWRRDSKDYSYDDDIHFEYNYRGQRERPNLRMLVGKIRQQFQKFSITDMLWWRGLARILEVKGYIREGDDKRYVQAKFPEFVRSMNEEAFWVYPEADMLLARKLTEKPFSSFSEWGKGWADPEIRRQRLQRMGVNRKSVKRKRKGKVQHDLRTSRGRLTAKLSKHK 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02078 854 MobiDBLite consensus disorder prediction 52 75 - -
Viun7g02078 854 SMART helicmild6 511 592 IPR001650 -
Viun7g02078 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 207 IPR027417 -
Viun7g02078 854 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 645 IPR001650 -
Viun7g02078 854 Pfam DEAD/DEAH box helicase 151 318 IPR011545 GO:0003676|GO:0005524
Viun7g02078 854 MobiDBLite consensus disorder prediction 820 854 - -
Viun7g02078 854 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Viun7g02078 854 FunFam ATP-dependent DNA helicase 118 340 - -
Viun7g02078 854 Pfam RecQ zinc-binding 613 663 IPR032284 -
Viun7g02078 854 MobiDBLite consensus disorder prediction 52 69 - -
Viun7g02078 854 Pfam Helicase conserved C-terminal domain 489 591 IPR001650 -
Viun7g02078 854 NCBIfam RecQ family ATP-dependent DNA helicase 138 367 IPR004589 GO:0004386|GO:0006310
Viun7g02078 854 MobiDBLite consensus disorder prediction 386 412 - -
Viun7g02078 854 SMART ultradead3 144 349 IPR014001 -
Viun7g02078 854 Gene3D - 118 340 IPR027417 -
Viun7g02078 854 Gene3D - 604 780 IPR036388 -
Viun7g02078 854 MobiDBLite consensus disorder prediction 820 838 - -
Viun7g02078 854 MobiDBLite consensus disorder prediction 386 404 - -
Viun7g02078 854 FunFam ATP-dependent DNA helicase 603 777 - -
Viun7g02078 854 PANTHER DNA HELICASE RECQ FAMILY MEMBER 126 727 - -
Viun7g02078 854 FunFam ATP-dependent DNA helicase 471 601 - -
Viun7g02078 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 603 IPR027417 -
Viun7g02078 854 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 51 IPR015940 -
Viun7g02078 854 CDD DEXHc_RecQ 136 339 - -
Viun7g02078 854 Gene3D - 470 601 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02078 Viun-Chr7 25588688 25595108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02078 491 610 Eukaryotic Initiation Factors Gene Family AT5G11170 27.500 1.12e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02078 K10900 - gmx:100793222 1299.65