Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02067 ATGAGCGGACGGTCAAGTCGCACAATTTATGTTGGCAATCTGCCTGGTGACATTCGCTTGAGAGAAGTTGAGGATCTTTTTTATAAGTATGGTCCTATTGTTGACATTGATTTGAAGATCCCTCCAAGACCACCGGGCTATGCTTTTGTAGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCAATATCGAGATGGTTACAATTTTGATGGTTTTCGGTTGCGAGTTGAACTTGCACATGGTGGACGGGGACATTCATCATCAGTAGACCGCTATAGTAACTACAGTGGTAGCAGTGGTAGTCGTGGAGTTTCTTGGCGTTCTGACTATCGTGTTCTGGTCACTGGATTACCTCCATCTGCTTCGTGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCGCAAGTCTTCCGTGAGCGTGGAGGCATGACTGGGATAGTTGATTATACCAATTATGATGATATGAAATATGCTATCAGGAAACTTGATGACTCAGAATTCCGCAATGCCTTTTCTCGAGCTTACATACGAGTGAGAGAATATGATCGAGCTTATTCTAGAAGTCGTAGTCTTGATTCAGGGAGGAGCTATTCTAGAAGTGTCAGCCGTAGCCCATACGTCTCCCGAAGTCGAAGCTGCAGCCGGAGCCGAAGTCATAGCTATAGTGACAGGAGTGGAAGTTTGTCTCCAAAAGCAAAACACCCTCATCGTTCAATATCTCTTTCAAGATCCCAGTCAAGATCTGGATCTCCAAATTCATCGCCTCGAACTCAGAGTCGCAGCCCTAGACGAAGTCCAAGCAACTCATCATAA 831 0.4513 MSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIQYRDGYNFDGFRLRVELAHGGRGHSSSVDRYSNYSGSSGSRGVSWRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRAYSRSRSLDSGRSYSRSVSRSPYVSRSRSCSRSRSHSYSDRSGSLSPKAKHPHRSISLSRSQSRSGSPNSSPRTQSRSPRRSPSNSS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02067 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Viun7g02067 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Viun7g02067 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Viun7g02067 276 MobiDBLite consensus disorder prediction 196 233 - -
Viun7g02067 276 CDD RRM2_SF2_plant_like 111 186 - -
Viun7g02067 276 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Viun7g02067 276 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 273 - -
Viun7g02067 276 MobiDBLite consensus disorder prediction 245 276 - -
Viun7g02067 276 MobiDBLite consensus disorder prediction 193 276 - -
Viun7g02067 276 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Viun7g02067 276 SMART rrm1_1 112 181 IPR000504 GO:0003723
Viun7g02067 276 SMART rrm1_1 8 78 IPR000504 GO:0003723
Viun7g02067 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Viun7g02067 276 Gene3D - 110 188 IPR012677 -
Viun7g02067 276 CDD RRM1_SF2_plant_like 8 79 - -
Viun7g02067 276 SUPERFAMILY RNA-binding domain, RBD 5 177 IPR035979 GO:0003676
Viun7g02067 276 Gene3D - 2 109 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02067 Viun-Chr7 25485045 25491383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02067 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 7.55e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02067 K12890 - gmx:100794282 389.808