Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02059 ATGGGGATCGATCTGAAGGCCGGAGGTAAGAGCAAAAAGACGAAAAGAACTGCACCAAAGTCCAATGATATCTACCTCAAGCTCTTGGTTAAGCTTTATCGCTTCCTTGTCCGGAGAACTGGCAGCAATTTCAATGCTGTTATACTCAAGCGATTGTTCATGAGCAAGGTTAACAAGGCCCCACTTTCTTTGTCAAGGTTGATTAAGTATACCAAGGGGAAGGAAGAAAAGATTGCTGTTGTGGTGGGGACTGTAACTGATGATATTCGTGTTTATGAAGTTCCATCCTTGAAAGTTACAGCACTAAGGTTTACCGAGACTGCACGTGCAAGAATTGAAAAGGCTGGTGGTGAATGTTTGACATTTGATCAGTTGGCGCTTAGGGCACCTCTTGGACAGAACACGGTTCTTCTTAGAGGCCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTTCCTCACAGCCACACCAAACCTTATGTTCGATCTAAGGGAAGGAAGTTCGAGAGGGCTAGAGGAAGGAGGAACAGCCGAGGATTTAGGGTGTGA 564 0.461 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKAPLSLSRLIKYTKGKEEKIAVVVGTVTDDIRVYEVPSLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02059 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Viun7g02059 187 Gene3D - 1 187 - -
Viun7g02059 187 MobiDBLite consensus disorder prediction 151 187 - -
Viun7g02059 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Viun7g02059 187 FunFam 60S ribosomal protein L18 1 187 - -
Viun7g02059 187 MobiDBLite consensus disorder prediction 164 187 - -
Viun7g02059 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02059 Viun-Chr7 25437316 25439549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02059 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.570 2.82e-105 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02059 K02883 - gmx:100791657 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02059 7 25437316 25439549 Viun7g02059 7 25437316 25439549 ECH
Viun6g01464 6 22961138 22963260 Viun7g02059 7 25437316 25439549 PCT