Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02047 ATGTCGTCTGAGCCGTTGATTCCACCGTCGGAAGCATTGTCAACTTCTAACTCCGTCAGGCGATGCGGCGAAACGGTGTGGATTTTCGATGAGTTGCCGAAGGCCACCGTCGTTTCCGTGTCGAGACCAGACACCGGAGACATTAGCTCAATCCTCCTTTCATATACCATTCAGTTGCAGTACAAACAGTTTAAATGGCTTCTAGTGAAGAAGGCATCACAACTTCTTTATTTACAGTTCTGTCTGCGAAAACGTGTAATAATTGAAGATTTTCATGACAGGCAAGAGCAGTTGAAAGAATGGCTCCAAAACTTGGGAATAGCAGATCAAACGGTAATAGTGCATGAAGATGAAGAACCTGATGATGGAGCTGTGCCTTTACTTCATGAAGACAGTGTTAAAAACAGATATGTTCCATCCGTTGCTGCTCTACCAATAATTCGTCCATCACTAGGAGGGCAACATTCAATTGCAGATAGAGCCAAAGTCGCAATGCAGGGTTACTTGAATCACTTTTTAGAAAACTTGGATATTGTGAATTCTCAAGAGGTCTGCAGGTTTTTGGAAGTCTCCAAGCTATCCTTTATACAGGAGTATGGTCCAAAACTGAAAGAGGGATTTGTAATGGTGAAGCATTTGTCAAATATTTCACAGGATTTGGATGTATCATGTTTCCCGTGCAATTGGTTTCGTTGTTGTAATAACAGCTGGAAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCCTCTTGGATGATCCCTTCAGCAACAAACCACTGGATATAATTATTTTTGATATCCTCCCTTCCTCTGAAGGAGTTGGAGGGACCAAAGCATATTTAGCTGATCCTATAAAAGGACGCAATCCTTTGCGTTATTCATTCAAGGTTACTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGTAGTCCTAAAGTAAAAGCTTGGGTTGCTGCAATAAACGAAGCTAGTCTGAGACCTCTTGAAGGTTGGTGTTGTCGTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGTTTGACAGAAGATGGGAGCCAAGCCCAATGGTTTGTTGATGGACATGCAGCATTTGAAGCTATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATCACGGGCTGGTGGCTATGCCCAGAGCTGTATCTGAGGCGACCTTTTGATAGTTTTTCTACCTCTCGGTTAGATTCTTTACTAGAAGAAAAGGCAAAGCAAGGGGTTCAGATCTATGTGCTTCTCTACAAGGAGGTTTCTTTAGCTTTGAAAATCAACAGCTTGTACAGTATGAAAAGACTGCTCAAAATTCATGAGAATGTGAAGGTACTGCGCTATCCAGATCATTTCGCTGCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCTGAACATAAAGTGGGTGACTGCCCTTCTGTAATATGGCCTGGAAAGGACTATTACAACCCAAGGGAATCTGAGCCAAATTCATGGGAAGACACCATGAAAGATGAATTGAATCGTGAGAAATATCCCCGTATGCCGTGGCACGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGTCATTTTGTCCAACGTTGGAACCATGCTAAGAGAACCAAAGCTCCAAATGAACATGAAATTCCTCTACTTATGCCTCACCATCACATGGTCCTTCCTCATTACATGGGAAGAAGCAGAGAGATAGACATTGAAGAAAAGAAAGATGAAGAAGAGAGGAAAGAAATTGTGAAGCAAGATTCATTTTCTTCAGAGTCTCCAGTGCAAGATATACCACTACTTTTACCGCAAGAAGCTGATGGAATTGTTACTTCAAATGGAGATCATACAAATTTTAGTGAAATTTCTCCATCGATGGAGGACGAAACTCTAGTTTCAGACACACAGACCAAAGGTTTTCAAGATGAAGTTGTTCCTTTACTCTTGGGAGCACAATCTTTTGCCGATGTTCTAGATGATTGGTGGGAAGCACCAGAAGGCACCAATGATGACACTATTTTGGAGTATGGACAAGTTGGTCCACGCACCACCTGTCATTGCCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGCCAGCCTGAAGAAAGCATTCACACTGCATATTGTTCCCTTATTGAAAAAGCAAAACATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTATCAGGGGATGACACAATACAGAACCGTATTTTGGAAGCTTTATATAGGCGTATTTTGCAAGCCCACAAAGAACAGAAAGACTTTAGAGTTATAGTAGTGATTCCCCTCTTACCTGGCTTCCAGGGTGGTCTAGATGATGGTGGTGCTGCTACAGTGAGAGCCTTAACACATTGGCAGTATAGAACGATTTCTAGAGAAAAGCACTCGATATTGTACAATCTTGAAACTGTACTTGGTCCTAAGACTTATGATTATATTTCTTTCTACGGTTTACGATCTCATGGTAGACTCTATGAAAATGGTCCTGTGGCTACAAGTCAGGTGTATGTGCACAGTAAATTGATGATAATTGATGATCGTGTATCTTTTATTGGATCATCGAACATAAATGACCGCAGTTTGCTTGGTTTAAGAGACTCTGAGATTGGAGTGCTTATAGAAGATAAAGAATATGTTGAATCTTTGATGAATGGAAAGCCATGGAAGGCTGGAAAATTTTCCTATAGCCTCCGCTGCTCCCTGTGGTCTGAACACCTTGGTCTTCATACCGGAGAGATCAGTAAAATCAGTGATCCGGTGGTAGATACAACCTACAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATGCAAGTATATACCATGAGGTCTTTGCTTGCATTCCCAACGATGAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGAGTGAGTTGAAAGAAAAAGTTGGTGATACGACGATAGATATGGGAATAGCCCCTGATAAGTTGGTGTGTCATGAAAATGGAGAAATGAAAAGAATAGAGGCGATAGATAGGTTGAAGTGTGTGAAGGGACACCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTTAGACCAGCTCTTATGGAGAGCGAGTTTTATGTTGCTCCTCAAGTCTATCATTGA 3216 0.4173 MSSEPLIPPSEALSTSNSVRRCGETVWIFDELPKATVVSVSRPDTGDISSILLSYTIQLQYKQFKWLLVKKASQLLYLQFCLRKRVIIEDFHDRQEQLKEWLQNLGIADQTVIVHEDEEPDDGAVPLLHEDSVKNRYVPSVAALPIIRPSLGGQHSIADRAKVAMQGYLNHFLENLDIVNSQEVCRFLEVSKLSFIQEYGPKLKEGFVMVKHLSNISQDLDVSCFPCNWFRCCNNSWKKVWAVLKPGFLALLDDPFSNKPLDIIIFDILPSSEGVGGTKAYLADPIKGRNPLRYSFKVTSGNRSILLRTTSSPKVKAWVAAINEASLRPLEGWCCRHRFGSFAPIRGLTEDGSQAQWFVDGHAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFDSFSTSRLDSLLEEKAKQGVQIYVLLYKEVSLALKINSLYSMKRLLKIHENVKVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMKDELNREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVLPHYMGRSREIDIEEKKDEEERKEIVKQDSFSSESPVQDIPLLLPQEADGIVTSNGDHTNFSEISPSMEDETLVSDTQTKGFQDEVVPLLLGAQSFADVLDDWWEAPEGTNDDTILEYGQVGPRTTCHCQVIRSVSQWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLSGDDTIQNRILEALYRRILQAHKEQKDFRVIVVIPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILYNLETVLGPKTYDYISFYGLRSHGRLYENGPVATSQVYVHSKLMIIDDRVSFIGSSNINDRSLLGLRDSEIGVLIEDKEYVESLMNGKPWKAGKFSYSLRCSLWSEHLGLHTGEISKISDPVVDTTYKDLWSATAKENASIYHEVFACIPNDEIHSRAALRQSMSELKEKVGDTTIDMGIAPDKLVCHENGEMKRIEAIDRLKCVKGHLVSFPLEFMREEDLRPALMESEFYVAPQVYH 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02047 1071 SMART pld_4 867 894 IPR001736 GO:0003824
Viun7g02047 1071 SMART pld_4 462 489 IPR001736 GO:0003824
Viun7g02047 1071 Gene3D - 204 330 IPR011993 -
Viun7g02047 1071 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 462 489 IPR001736 GO:0003824
Viun7g02047 1071 Pfam Phospholipase D Active site motif 462 489 IPR001736 GO:0003824
Viun7g02047 1071 CDD PLDc_vPLD1_2_yPLD_like_1 355 500 - -
Viun7g02047 1071 SUPERFAMILY Phospholipase D/nuclease 706 917 - -
Viun7g02047 1071 FunFam Phospholipase 701 921 - -
Viun7g02047 1071 PIRSF PLD_euk 30 1071 IPR016555 GO:0004630|GO:0006654|GO:0048017
Viun7g02047 1071 PANTHER PHOSPHOLIPASE D 161 1055 IPR015679 -
Viun7g02047 1071 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 867 894 IPR001736 GO:0003824
Viun7g02047 1071 CDD PH_PLD 179 325 - -
Viun7g02047 1071 CDD PLDc_vPLD1_2_yPLD_like_2 727 911 - -
Viun7g02047 1071 SUPERFAMILY PH domain-like 234 334 - -
Viun7g02047 1071 Gene3D Endonuclease Chain A 349 587 - -
Viun7g02047 1071 Gene3D Endonuclease Chain A 690 930 - -
Viun7g02047 1071 SUPERFAMILY Phospholipase D/nuclease 314 582 - -
Viun7g02047 1071 SMART PH_update 202 329 IPR001849 -
Viun7g02047 1071 Pfam PLD-like domain 740 914 IPR025202 -
Viun7g02047 1071 ProSiteProfiles PH domain profile. 201 327 IPR001849 -
Viun7g02047 1071 Pfam PH domain 204 326 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02047 Viun-Chr7 25354880 25362497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02047 28 1071 Phospholipase D Gene Family (Wang group) AT3G05630 66.131 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02047 K01115 - gmx:100796914 1957.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02047 7 25354880 25362497 Viun7g02047 7 25354880 25362497 ECH