Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02038 ATGGATTTTGGGATCTCTGTAGTTAATTTTCTCTCTTACTTTTTTTTTTGTAGATTGGTAAATCAGATCCATGGTGGGATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAACTTCAGAAAAAAGGTTCGGTCAAAGGAGGGAGGATCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGATGGCAGAGAGGTATCTGACTACTATTGCTCCTCCCTTGATGGATGTGCATCAGAGGATAGTTTTGGGAGTTTTTTGGCAGAGGAGGATGAGGAATTTCAAACAGTGAGGAATTTCAATAGATCCAAGGCAAAAAAGAGCACTGCTATTAGGCCGAAAAATGCCAGTAAAAACTCGCACCAGAGGGAAAGGATTAAATATGCAGAAGAGGAGGAAGAAGAGGACGAGGAGGAGTTGGAAGAAGAGGAAGAGGAAGAGGAGGAAGAAGAATACAAAGTGGAGGAAGAGGAGGAGGAGGAGGAAATTCAAGAGGCGAGGAATTTCAGTAGACCAAAGGCAAAAAATGGTGTATGCAGTAAGAAAAGAAGTGCAGGAAAAATCTCCTCAAAGAGGGGAAGGAAAATACACACAGAACAACTGGAAGAGGAGGAGGAAGAGGTCAAACTAGAGGAGGAGGAGGAGGAAGAGAAGGAGAAGGTGGATAGAGATGGAAATGACGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGAGGATGAGGATGAGGATGATGAGTTTTTCCCTGAGGAAGATGATTATTCAGATGAGGAAGAAGAAATGAGAGGGAAAAAGAAGACCAATGATGGCATGAAAATGGTCAAAAAGGTTTTTCAGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAGGTAGAAAAAGGCAGAGTTCTAGAGCAACAAAGAAGCCCTTGAGAAAGAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGTAAGATGTGAAGATGAAGATGAAGATGATTTTATAGATAATAGCCCAACCATGACAACAAGTAAGAAAAAACGGGGCCAGAAGAGAAAAAGGGTACTTCTTTCAGATTCAGAATATGCATCTTCTGGATCGTCTGATTTTGAGTTTACTATATCTGAAGAAGAGAGAGAACAGGTGCGAGAAGCCAAAAAATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAACAATGAAGAGGTTGGTGCCCATGAGGAACAAGTTCAGTTGCGAAAACCGCCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGTAAAAAGTGAGATGGGTAAGCAAGTGTGTGGGATTTGTCTGTCCGAAGAAGATAAAAGAAGAGTTAGGGGAGTACTAAATTGCTGTACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGTTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCTCGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCCGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTATGCGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGAGGGCTGTAGACCAGTCGCTCTGGGATCATCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGTTGACAATCCAGAACCTTCCTGTTAGGCCACCTCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCCTCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTCCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAGGGATCTTCACCTGTATCTGGTGGAGCGCCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAATTACTTTCAATAGATAGGATGGCTGCTACACCTGGCAGAACCACCAATGGTTTTTCAGCTACCAGTTCAACTAGTAACTTGTATAGCACTCAAATTGATCAAAGCAGGGGAACCGCCACTCTTCATGCAAGGACGCAGGATGTGGGAACGTCATACCACACATTTTTTGATGACAGATTATGTAACAATACCTCTCCGCTAATGCAGAATGGGCCATTATGGCCTGGACTCATGGCGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGTAGATCAAACATTGTCCCTGATGATGGCTTATCCACTGCTGTCAGAGAAGAGACGAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAGAGTTTGTCCCAAAATATTGATTTAGGCCACAGTACTTTCAAGGATGTTGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGATCTTGAGCACAAGAACAGTGAAGTTTGCAATGTGCCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGCTGGCGGGCCAACTAGTCTGATTAAAGGTTGCTGCTCATCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCATCCCAGTGGTTACGATTAGGTCTATAG 2709 0.4367 MDFGISVVNFLSYFFFCRLVNQIHGGMVRGGRFSGKRNFRKKVRSKEGGSDDSDEDYVVSDDGREVSDYYCSSLDGCASEDSFGSFLAEEDEEFQTVRNFNRSKAKKSTAIRPKNASKNSHQRERIKYAEEEEEEDEEELEEEEEEEEEEEYKVEEEEEEEEIQEARNFSRPKAKNGVCSKKRSAGKISSKRGRKIHTEQLEEEEEEVKLEEEEEEEKEKVDRDGNDEEEEGDRDGEDEDFDYEDEDEDDEFFPEEDDYSDEEEEMRGKKKTNDGMKMVKKVFQKKRSSVVSTRGRKRQSSRATKKPLRKKRRKNGRLRKKVRCEDEDEDDFIDNSPTMTTSKKKRGQKRKRVLLSDSEYASSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHLINNEEVGAHEEQVQLRKPPARKGKEKIEEPQGRKGKEKVEVKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCEGCRPVALGSSSSQVQEGVADPRLTIQNLPVRPPPALHVRESIDLNLISSPRAAFNQGFGHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMAATPGRTTNGFSATSSTSNLYSTQIDQSRGTATLHARTQDVGTSYHTFFDDRLCNNTSPLMQNGPLWPGLMATPPVPDCEQVHQFSRSNIVPDDGLSTAVREETNFHTAKEQLQSMVKSHLKSLSQNIDLGHSTFKDVARSSMHTILAACDLEHKNSEVCNVPPPSACPHMELMAGGPTSLIKGCCSSCFDSFVGDVVKRVLDTRVSSQWLRLGL 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02038 902 ProSiteProfiles Zinc finger RING-type profile. 450 492 IPR001841 -
Viun7g02038 902 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 590 IPR013083 -
Viun7g02038 902 Coils Coil 194 231 - -
Viun7g02038 902 MobiDBLite consensus disorder prediction 176 191 - -
Viun7g02038 902 SUPERFAMILY FYVE/PHD zinc finger 512 588 IPR011011 -
Viun7g02038 902 CDD RING-HC_Topors 448 495 - -
Viun7g02038 902 MobiDBLite consensus disorder prediction 401 440 - -
Viun7g02038 902 Pfam Ring finger domain 449 492 IPR001841 -
Viun7g02038 902 MobiDBLite consensus disorder prediction 290 319 - -
Viun7g02038 902 PANTHER F18C1.6 PROTEIN 188 892 - -
Viun7g02038 902 SMART ring_2 450 491 IPR001841 -
Viun7g02038 902 ProSitePatterns Zinc finger RING-type signature. 469 478 IPR017907 -
Viun7g02038 902 ProSiteProfiles Zinc finger PHD-type profile. 540 589 IPR019787 -
Viun7g02038 902 MobiDBLite consensus disorder prediction 404 440 - -
Viun7g02038 902 MobiDBLite consensus disorder prediction 204 262 - -
Viun7g02038 902 MobiDBLite consensus disorder prediction 263 281 - -
Viun7g02038 902 Coils Coil 373 393 - -
Viun7g02038 902 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 513 IPR013083 -
Viun7g02038 902 Coils Coil 119 169 - -
Viun7g02038 902 SMART PHD_3 542 587 IPR001965 -
Viun7g02038 902 Pfam PHD-finger 542 588 IPR019787 -
Viun7g02038 902 MobiDBLite consensus disorder prediction 130 163 - -
Viun7g02038 902 SUPERFAMILY RING/U-box 443 498 - -
Viun7g02038 902 MobiDBLite consensus disorder prediction 98 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02038 Viun-Chr7 25223403 25226969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02038 537 586 C2H2 Transcription Factor Family AT3G01460 46.154 2.32e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun7g02038 PHD 4.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02038 - - vun:114191996 1585.47