Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02037 ATGATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAACTTCAGAAAAAAGGTTCGGTCAAAGGAGGGAGGATCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGATGGCAGAGAGGTATCTGACTACTATTGCTCCTCCCTTGATGGATGTGCATCAGAGGATAGTTTTGGGAGTTTTTTGGCAGAGGAGGATGAGGAATTTCAAACAGTGAGGAATTTCAATAGATCCAAGGCAAAAAAGAGCACTGCTATTAGGCCGAAAAATGCCAGTAAAAACTCGCACCAGAGGGAAAGGATTAAATATGCAGAAGAGGAGGAAGAAGAGGACGAGGAGGAGTTGGAAGAAGAGGAAGAGGAAGAGGAGGAAGAAGAATACAAAGTGGAGGAAGAGGAGGAGGAGGAGGAAATTCAAGAGGCGAGGAATTTCAGTAGACCAAAGGCAAAAAATGGTGTATGCAGTAAGAAAAGAAGTGCAGGAAAAATCTCCTCAAAGAGGGGAAGGAAAATACACACAGAACAACTGGAAGAGGAGGAGGAAGAGGTCAAACTAGAGGAGGAGGAGGAGGAAGAGAAGGAGAAGGTGGATAGAGATGGAAATGACGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGAGGATGAGGATGAGGATGATGAGTTTTTCCCTGAGGAAGATGATTATTCAGATGAGGAAGAAGAAATGAGAGGGAAAAAGAAGACCAATGATGGCATGAAAATGGTCAAAAAGGTTTTTCAGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAGGTAGAAAAAGGCAGAGTTCTAGAGCAACAAAGAAGCCCTTGAGAAAGAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGTAAGATGTGAAGATGAAGATGAAGATGATTTTATAGATAATAGCCCAACCATGACAACAAGTAAGAAAAAACGGGGCCAGAAGAGAAAAAGGGTACTTCTTTCAGATTCAGAATATGCATCTTCTGGATCGTCTGATTTTGAGTTTACTATATCTGAAGAAGAGAGAGAACAGGTGCGAGAAGCCAAAAAATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAACAATGAAGAGGTTGGTGCCCATGAGGAACAAGTTCAGTTGCGAAAACCGCCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGTAAAAAGTGAGATGGGTAAGCAAGTGTGTGGGATTTGTCTGTCCGAAGAAGATAAAAGAAGAGTTAGGGGAGTACTAAATTGCTGTACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGTTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCTCGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCCGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTATGCGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGAGGGCTGTAGACCAGTCGCTCTGGGATCATCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGTTGACAATCCAGAACCTTCCTGTTAGGCCACCTCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCCTCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTCCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAGGGATCTTCACCTGTATCTGGTGGAGCGCCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAATTACTTTCAATAGATAGGATGGCTGCTACACCTGGCAGAACCACCAATGGTTTTTCAGCTACCAGTTCAACTAGTAACTTGTATAGCACTCAAATTGATCAAAGCAGGGGAACCGCCACTCTTCATGCAAGGACGCAGGATGTGGGAACGTCATACCACACATTTTTTGATGACAGATTATGTAACAATACCTCTCCGCTAATGCAGAATGGGCCATTATGGCCTGGACTCATGGCGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGTAGATCAAACATTGTCCCTGATGATGGCTTATCCACTGCTGTCAGAGAAGAGACGAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAGAGTTTGTCCCAAAATATTGATTTAGGCCACAGTACTTTCAAGGATGTTGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGATCTTGAGCACAAGAACAGTGAAGTTTGCAATGTGCCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGCTGGCGGGCCAACTAGTCTGATTAAAGGTTGCTGCTCATCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCATCCCAGTGGTTACGATTAGGTCTATAG 2634 0.4396 MMVRGGRFSGKRNFRKKVRSKEGGSDDSDEDYVVSDDGREVSDYYCSSLDGCASEDSFGSFLAEEDEEFQTVRNFNRSKAKKSTAIRPKNASKNSHQRERIKYAEEEEEEDEEELEEEEEEEEEEEYKVEEEEEEEEIQEARNFSRPKAKNGVCSKKRSAGKISSKRGRKIHTEQLEEEEEEVKLEEEEEEEKEKVDRDGNDEEEEGDRDGEDEDFDYEDEDEDDEFFPEEDDYSDEEEEMRGKKKTNDGMKMVKKVFQKKRSSVVSTRGRKRQSSRATKKPLRKKRRKNGRLRKKVRCEDEDEDDFIDNSPTMTTSKKKRGQKRKRVLLSDSEYASSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHLINNEEVGAHEEQVQLRKPPARKGKEKIEEPQGRKGKEKVEVKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCEGCRPVALGSSSSQVQEGVADPRLTIQNLPVRPPPALHVRESIDLNLISSPRAAFNQGFGHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMAATPGRTTNGFSATSSTSNLYSTQIDQSRGTATLHARTQDVGTSYHTFFDDRLCNNTSPLMQNGPLWPGLMATPPVPDCEQVHQFSRSNIVPDDGLSTAVREETNFHTAKEQLQSMVKSHLKSLSQNIDLGHSTFKDVARSSMHTILAACDLEHKNSEVCNVPPPSACPHMELMAGGPTSLIKGCCSSCFDSFVGDVVKRVLDTRVSSQWLRLGL 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02037 877 CDD RING-HC_Topors 423 470 - -
Viun7g02037 877 ProSitePatterns Zinc finger RING-type signature. 444 453 IPR017907 -
Viun7g02037 877 MobiDBLite consensus disorder prediction 376 415 - -
Viun7g02037 877 Pfam PHD-finger 517 563 IPR019787 -
Viun7g02037 877 SUPERFAMILY FYVE/PHD zinc finger 487 563 IPR011011 -
Viun7g02037 877 MobiDBLite consensus disorder prediction 105 138 - -
Viun7g02037 877 SMART PHD_3 517 562 IPR001965 -
Viun7g02037 877 MobiDBLite consensus disorder prediction 238 256 - -
Viun7g02037 877 Coils Coil 169 206 - -
Viun7g02037 877 MobiDBLite consensus disorder prediction 179 237 - -
Viun7g02037 877 MobiDBLite consensus disorder prediction 379 415 - -
Viun7g02037 877 MobiDBLite consensus disorder prediction 1 37 - -
Viun7g02037 877 Coils Coil 94 144 - -
Viun7g02037 877 Pfam Ring finger domain 424 467 IPR001841 -
Viun7g02037 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 488 IPR013083 -
Viun7g02037 877 MobiDBLite consensus disorder prediction 151 166 - -
Viun7g02037 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 565 IPR013083 -
Viun7g02037 877 MobiDBLite consensus disorder prediction 265 294 - -
Viun7g02037 877 ProSiteProfiles Zinc finger PHD-type profile. 515 564 IPR019787 -
Viun7g02037 877 SUPERFAMILY RING/U-box 418 473 - -
Viun7g02037 877 SMART ring_2 425 466 IPR001841 -
Viun7g02037 877 MobiDBLite consensus disorder prediction 69 327 - -
Viun7g02037 877 Coils Coil 348 368 - -
Viun7g02037 877 ProSiteProfiles Zinc finger RING-type profile. 425 467 IPR001841 -
Viun7g02037 877 PANTHER F18C1.6 PROTEIN 163 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02037 Viun-Chr7 25223403 25227209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02037 512 561 C2H2 Transcription Factor Family AT3G01460 46.154 2.19e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun7g02037 PHD 4.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02037 - - vun:114191996 1531.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02037 7 25223403 25227209 Viun7g02037 7 25223403 25227209 ECH