Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02036 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAACTTCAGAAAAAAGGTTCGGTCAAAGGAGGGAGGATCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGATGGCAGAGAGGTATCTGACTACTATTGCTCCTCCCTTGATGGATGTGCATCAGAGGATAGTTTTGGGAGTTTTTTGGCAGAGGAGGATGAGGAATTTCAAACAGTGAGGAATTTCAATAGATCCAAGGCAAAAAAGAGCACTGCTATTAGGCCGAAAAATGCCAGTAAAAACTCGCACCAGAGGGAAAGGATTAAATATGCAGAAGAGGAGGAAGAAGAGGACGAGGAGGAGTTGGAAGAAGAGGAAGAGGAAGAGGAGGAAGAAGAATACAAAGTGGAGGAAGAGGAGGAGGAGGAGGAAATTCAAGAGGCGAGGAATTTCAGTAGACCAAAGGCAAAAAATGGTGTATGCAGTAAGAAAAGAAGTGCAGGAAAAATCTCCTCAAAGAGGGGAAGGAAAATACACACAGAACAACTGGAAGAGGAGGAGGAAGAGGTCAAACTAGAGGAGGAGGAGGAGGAAGAGAAGGAGAAGGTGGATAGAGATGGAAATGACGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGAGGATGAGGATGAGGATGATGAGTTTTTCCCTGAGGAAGATGATTATTCAGATGAGGAAGAAGAAATGAGAGGGAAAAAGAAGACCAATGATGGCATGAAAATGGTCAAAAAGGTTTTTCAGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAGGTAGAAAAAGGCAGAGTTCTAGAGCAACAAAGAAGCCCTTGAGAAAGAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGTAAGATGTGAAGATGAAGATGAAGATGATTTTATAGATAATAGCCCAACCATGACAACAAGTAAGAAAAAACGGGGCCAGAAGAGAAAAAGGGTACTTCTTTCAGATTCAGAATATGCATCTTCTGGATCGTCTGATTTTGAGTTTACTATATCTGAAGAAGAGAGAGAACAGGTGCGAGAAGCCAAAAAATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAACAATGAAGAGGTTGGTGCCCATGAGGAACAAGTTCAGTTGCGAAAACCGCCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGTAAAAAGTGAGATGGGTAAGCAAGTGTGTGGGATTTGTCTGTCCGAAGAAGATAAAAGAAGAGTTAGGGGAGTACTAAATTGCTGTACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGTTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCTCGGTCAACCACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCCGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTATGCGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGAGGGCTGTAGACCAGTCGCTCTGGGATCATCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGTTGACAATCCAGAACCTTCCTGTTAGGCCACCTCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCCTCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTCCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAGGGATCTTCACCTGTATCTGGTGGAGCGCCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAATTACTTTCAATAGATAGGATGGCTGCTACACCTGGCAGAACCACCAATGGTTTTTCAGCTACCAGTTCAACTAGTAACTTGTATAGCACTCAAATTGATCAAAGCAGGGGAACCGCCACTCTTCATGCAAGGACGCAGGATGTGGGAACGTCATACCACACATTTTTTGATGACAGATTATGTAACAATACCTCTCCGCTAATGCAGAATGGGCCATTATGGCCTGGACTCATGGCGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGTAGATCAAACATTGTCCCTGATGATGGCTTATCCACTGCTGTCAGAGAAGAGACGAACTTTCACACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAAGTCACCTGAAGAGTTTGTCCCAAAATATTGATTTAGGCCACAGTACTTTCAAGGATGTTGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGATCTTGAGCACAAGAACAGTGAAGTTTGCAATGTGCCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGCTGGCGGGCCAACTAGTCTGATTAAAGGTTGCTGCTCATCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCATCCCAGTGGTTACGATTAGGTCTATAG 2631 0.4398 MVRGGRFSGKRNFRKKVRSKEGGSDDSDEDYVVSDDGREVSDYYCSSLDGCASEDSFGSFLAEEDEEFQTVRNFNRSKAKKSTAIRPKNASKNSHQRERIKYAEEEEEEDEEELEEEEEEEEEEEYKVEEEEEEEEIQEARNFSRPKAKNGVCSKKRSAGKISSKRGRKIHTEQLEEEEEEVKLEEEEEEEKEKVDRDGNDEEEEGDRDGEDEDFDYEDEDEDDEFFPEEDDYSDEEEEMRGKKKTNDGMKMVKKVFQKKRSSVVSTRGRKRQSSRATKKPLRKKRRKNGRLRKKVRCEDEDEDDFIDNSPTMTTSKKKRGQKRKRVLLSDSEYASSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHLINNEEVGAHEEQVQLRKPPARKGKEKIEEPQGRKGKEKVEVKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCEGCRPVALGSSSSQVQEGVADPRLTIQNLPVRPPPALHVRESIDLNLISSPRAAFNQGFGHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMAATPGRTTNGFSATSSTSNLYSTQIDQSRGTATLHARTQDVGTSYHTFFDDRLCNNTSPLMQNGPLWPGLMATPPVPDCEQVHQFSRSNIVPDDGLSTAVREETNFHTAKEQLQSMVKSHLKSLSQNIDLGHSTFKDVARSSMHTILAACDLEHKNSEVCNVPPPSACPHMELMAGGPTSLIKGCCSSCFDSFVGDVVKRVLDTRVSSQWLRLGL 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02036 876 ProSiteProfiles Zinc finger PHD-type profile. 514 563 IPR019787 -
Viun7g02036 876 Pfam Ring finger domain 423 466 IPR001841 -
Viun7g02036 876 Coils Coil 93 143 - -
Viun7g02036 876 SMART ring_2 424 465 IPR001841 -
Viun7g02036 876 MobiDBLite consensus disorder prediction 68 326 - -
Viun7g02036 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 487 IPR013083 -
Viun7g02036 876 SMART PHD_3 516 561 IPR001965 -
Viun7g02036 876 MobiDBLite consensus disorder prediction 378 414 - -
Viun7g02036 876 MobiDBLite consensus disorder prediction 264 293 - -
Viun7g02036 876 CDD RING-HC_Topors 422 469 - -
Viun7g02036 876 ProSitePatterns Zinc finger RING-type signature. 443 452 IPR017907 -
Viun7g02036 876 MobiDBLite consensus disorder prediction 237 255 - -
Viun7g02036 876 Coils Coil 347 367 - -
Viun7g02036 876 MobiDBLite consensus disorder prediction 104 137 - -
Viun7g02036 876 PANTHER F18C1.6 PROTEIN 162 866 - -
Viun7g02036 876 MobiDBLite consensus disorder prediction 178 236 - -
Viun7g02036 876 MobiDBLite consensus disorder prediction 1 36 - -
Viun7g02036 876 Pfam PHD-finger 516 562 IPR019787 -
Viun7g02036 876 SUPERFAMILY FYVE/PHD zinc finger 486 562 IPR011011 -
Viun7g02036 876 MobiDBLite consensus disorder prediction 150 165 - -
Viun7g02036 876 Coils Coil 168 205 - -
Viun7g02036 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 564 IPR013083 -
Viun7g02036 876 ProSiteProfiles Zinc finger RING-type profile. 424 466 IPR001841 -
Viun7g02036 876 SUPERFAMILY RING/U-box 417 472 - -
Viun7g02036 876 MobiDBLite consensus disorder prediction 375 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02036 Viun-Chr7 25223403 25227450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02036 511 560 C2H2 Transcription Factor Family AT3G01460 46.154 2.17e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun7g02036 PHD 4.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02036 - - vun:114191996 1531.15