Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02024 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAACACAGAGATGCGTTGAAGACTGTTCGCATTCCCTCCATCTCTCTGCCGCAGTCCACCTCCTCCCGCGGCGGTGGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCTAATCGCTCTTACGCTCCGCTTAGTACCGATGATCCTGGCAATTCGAGTCGGGGTCCAAATGCAGTCAATTTGGGGCTACCTCCTGCGTGGGTGGATTTATCGGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCGTCATTCGGAGATGGGAAAGAAGACCAACATGCTATCGAGACTCTAACATACGAGATAACTGACTTAATAAAGAGGTCGGAGAAGAGACTCCGGAGACTTTCTGCTTCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAACGTGCAGCGAGCTCTTGCTACTGACCTTCAAAACCTCTCTGTTGAGCTACGCAAGAAACAATCAACTTATTTAAAGCGCCTCAGACTACAGAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAACTTGAATGGAGGTAAATCAAGATTTGAAGATGATGATTTAGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTGAAGAGAAGTGAAACATTCACAGTAGAAAGAGAAAAAGAGATCCAGCAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATCGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCAAAGTTGAGGATGGGCTTAAACAGCTGCAGAAGGCAGAAAGAACTCAGAAAAAGGGGGGTATGGTAATGTGTGCTACTGTGCTTGTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTGTTTTGTGA 987 0.4549 MATRNRTLLFRKHRDALKTVRIPSISLPQSTSSRGGGGGPVIELVSTSLLNPNRSYAPLSTDDPGNSSRGPNAVNLGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHAIETLTYEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRALATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRFEDDDLDNMVFNEHQMAKLKRSETFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATKVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIVL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02024 328 Pfam SNARE domain 268 320 IPR000727 -
Viun7g02024 328 MobiDBLite consensus disorder prediction 53 72 - -
Viun7g02024 328 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 232 294 IPR000727 -
Viun7g02024 328 CDD SNARE_syntaxin16 237 293 - -
Viun7g02024 328 ProSitePatterns Syntaxin / epimorphin family signature. 238 277 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun7g02024 328 FunFam Syntaxin-43 79 286 - -
Viun7g02024 328 SMART SynN_4 73 188 IPR006011 GO:0016020
Viun7g02024 328 Coils Coil 86 106 - -
Viun7g02024 328 SUPERFAMILY t-snare proteins 78 287 IPR010989 GO:0016020|GO:0016192
Viun7g02024 328 Coils Coil 277 297 - -
Viun7g02024 328 SMART tSNARE_6 227 294 IPR000727 -
Viun7g02024 328 Gene3D - 79 286 - -
Viun7g02024 328 PANTHER SYNTAXIN 86 313 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02024 Viun-Chr7 25172679 25177968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02024 1 328 SNARE and Associated Proteins AT5G26980 76.220 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02024 K08489 - gmx:100796741 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02024 7 25172679 25177968 Viun7g02024 7 25172679 25177968 ECH
Viun1g02791 1 37227931 37232600 Viun7g02024 7 25172679 25177968 ECH