Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02016 ATGGGTAGCTGTAGCAGGAAGAAGAACCAAGATCTGGAGTTAGAGAAAGCTCGCTTAATCAGTTTAGCACTCGATTTCGGTTTCGACGAATCCTCTGCTAACAAATGCCTCCACCGTCTCATCGATCTCTACGGAGAAGACGGTTGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTTATCGCGACTCTAGCGGAGTCGATGCAGGCCACCGAAGATTGGGATGACCTTCAGGAAATGGAATCACAAGCGTGCGGAACCTTGACGCACGTGCTTGACAAAACCGTTGCTCCGGGTGCCGATGCGGATAACGACGACGCTTCGAGAAGCTTCATTAATGTTGTTGACGACTCGCCTCAACCGCAGAAACGCAGACGCCGCGCTAAGGTAGTGGAGTTGGATTCGAGTGACGATGAGGATATGCACTGTAGTGTTCCGAGGGGAAAATCTGTGGATTGCAGAAGTGGCATCACTCAAGGCTCTCTTTCATCAACTTCCAGCAAAATGCAATCCTCCTTTGCATCATGGGATAAAAGCGGTACTCTCACTTATGAAGAATTGCAAGCTCTAGATGATATTGAATTGGCCAATGTTGTTATCTTTGGTAATAGTACATTTCGACCATTGCAGCATCGGGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCCTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTCACGGTGGTTGTATCTCCATTACTCTCACTCATTCAGGATCAGATAATAACACTAAACCTCAAGTTTGGAATACCTGCTACTTTCTTAAATTCCCAACAAACTGCTTCCCAGGCCACAGCTGTGCTCCAAGAACTAAGAAAAGACAAACCATCATGCAAACTTTTATATGTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTGGAGATTTTGAAATGCATGCATCGGAAGGGACAACTAGCAGGTTTTGTTATTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTAAAGCAAAAGTTTCCAGATGTACCCGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGAGGACATATTAAATGCTCTAAGAATTCCTCATGCACTCGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTGATTGGTAAAACAAAGGAACCACTAAAGCAGCTTGGTCAGCTACTAATTGATCGCTTCAGGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCTAAATTTTTAAATGAGAAATGCAAGATCAAAACAGTGTATTACCATGCTGGCTTGGCTGCCCGGCAGAGAATAGCTGTTCAAAAGAAATGGCATGACGGGGAGGTCGATATTGTGTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCAGTTTGCATTGCTCTTTACCAAAAGAAGGATTTTAGCAGAGTTGTATGCATGCTAAGAAATGGTCAGGGATATAAAAAGGAAAATTTTAAGACAGCAATGGTTCAAGCCAAAAAGATGCAAGATTACTGTGAAATAAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTCGGGGAATCTTTTGATAGAAAATCCTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGTATTATGA 1827 0.4346 MGSCSRKKNQDLELEKARLISLALDFGFDESSANKCLHRLIDLYGEDGCDFITVEHCGDDFIATLAESMQATEDWDDLQEMESQACGTLTHVLDKTVAPGADADNDDASRSFINVVDDSPQPQKRRRRAKVVELDSSDDEDMHCSVPRGKSVDCRSGITQGSLSSTSSKMQSSFASWDKSGTLTYEELQALDDIELANVVIFGNSTFRPLQHRACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKCMHRKGQLAGFVIDEAHCVSQWGHDFRPDYRGLGSLKQKFPDVPVMALTATATHAVREDILNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLIDRFRNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRIAVQKKWHDGEVDIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCMLRNGQGYKKENFKTAMVQAKKMQDYCEIKVECRRQTLLKHFGESFDRKSCKYGSSPCDNCLKTVL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02016 608 FunFam ATP-dependent DNA helicase 399 606 - -
Viun7g02016 608 Pfam DEAD/DEAH box helicase 209 377 IPR011545 GO:0003676|GO:0005524
Viun7g02016 608 CDD DEXHc_RecQ 201 398 - -
Viun7g02016 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 566 IPR001650 -
Viun7g02016 608 Gene3D - 162 398 IPR027417 -
Viun7g02016 608 NCBIfam RecQ family ATP-dependent DNA helicase 201 606 IPR004589 GO:0004386|GO:0006310
Viun7g02016 608 PANTHER DNA HELICASE RECQ FAMILY MEMBER 189 604 - -
Viun7g02016 608 SMART helicmild6 441 523 IPR001650 -
Viun7g02016 608 SMART ultradead3 203 407 IPR014001 -
Viun7g02016 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 391 IPR014001 -
Viun7g02016 608 CDD SF2_C_RecQ 399 532 - -
Viun7g02016 608 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 330 339 IPR002464 -
Viun7g02016 608 Pfam RecQ zinc-binding 535 604 IPR032284 -
Viun7g02016 608 Pfam Helicase conserved C-terminal domain 415 522 IPR001650 -
Viun7g02016 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 543 IPR027417 -
Viun7g02016 608 Gene3D - 399 607 IPR027417 -
Viun7g02016 608 FunFam ATP-dependent DNA helicase 188 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02016 Viun-Chr7 25122862 25129059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02016 421 521 Eukaryotic Initiation Factors Gene Family AT5G11170 31.683 7.60e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02016 K10899 - gmx:100806070 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02016 7 25122862 25129059 Viun7g02016 7 25122862 25129059 ECH