Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01999 ATGGAAAACTTTTACAAGCTCAACTCTCTCCTATCTTGTACCCAGGATGTCGTTAGAGAAGTCAACATCAACGTTTCCGCTGCATCTGAATTGAATCTAGGACTTGTGGCCAATAACTTCCTTCACCTGGAACACCCAGAAACCTCTGATATGTCGGAACGGTTCATCAAGTCCCAGATCGCCACTCACCCTCTTTATCCAAATCTAGTATCTGCTTACATAGAATGTCGAAAGGTTGGAGCACCGCCAGAACTCGCTTCACTTCTTGAAGAAATAGCCCGTGAAAACCACCCAACGAATGCTCTTCGTGAGATAGGAGATGATCCTGAGCTTGACGAGTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCGACGAAGCGACCTTGTTCTTGTGTAGTATCGAATTGCAACTCAGCAATCTTTGTAAGGGAACACTCGCATTGCCACTGGATAACAACCGCTCAGATGAGGCAGGTGGGACATCAGAAGATGAATTGAGTTGGGAGAAGATGGAAGCAGTGGAAGGTCACGAATCTTCTGGGACTCGTCCCGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTACCTTAGCAGCTTAAGAAAGGAATTTTTGAAGAAAAGGAAAAAGGGTAAACTTCCAAAGGAAGCAAGGAGGATACTCTTGGACTGGTGGACCACTCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGCTATCAGAAATGACAGGGCTTGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGAAAACGGCACTGGAAACCATCTGAAGACATGCGATTTGCCATTATGGATGGTGTAAGTGGCAGTGCCATAGGTGGAGGACCTATGTAG 909 0.4532 MENFYKLNSLLSCTQDVVREVNINVSAASELNLGLVANNFLHLEHPETSDMSERFIKSQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARENHPTNALREIGDDPELDEFMESYCEVLHRYKQELSKPFDEATLFLCSIELQLSNLCKGTLALPLDNNRSDEAGGTSEDELSWEKMEAVEGHESSGTRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKEARRILLDWWTTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSAIGGGPM 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01999 302 SUPERFAMILY Homeodomain-like 219 292 IPR009057 -
Viun7g01999 302 Gene3D - 215 287 - -
Viun7g01999 302 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Viun7g01999 302 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Viun7g01999 302 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Viun7g01999 302 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 65 287 - -
Viun7g01999 302 SMART HOX_1 219 284 IPR001356 GO:0003677
Viun7g01999 302 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Viun7g01999 302 Pfam KNOX2 domain 105 151 IPR005541 GO:0003677|GO:0005634
Viun7g01999 302 SMART ELK_2 197 218 IPR005539 GO:0003677
Viun7g01999 302 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Viun7g01999 302 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Viun7g01999 302 MobiDBLite consensus disorder prediction 166 196 - -
Viun7g01999 302 CDD homeodomain 229 281 IPR001356 GO:0003677
Viun7g01999 302 Pfam ELK domain 197 218 IPR005539 GO:0003677
Viun7g01999 302 MobiDBLite consensus disorder prediction 161 196 - -
Viun7g01999 302 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01999 Viun-Chr7 24958358 24962276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01999 50 295 Homeobox Transcription Factor Family AT1G23380 54.902 9.40e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun7g01999 KNOX2 8.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01999 - - gmx:102660463 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01999 7 24958358 24962276 Viun7g01999 7 24958358 24962276 ECH
Viun1g02979 1 38467080 38471590 Viun7g01999 7 24958358 24962276 PCT