Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01997 ATGTTGCAATTCACAAAAGCTTCATCTTCTCGACTGACTGGATCTTCTCCAGGATTGTACGGTTTATCAAAAATTAATGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGAAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGGAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTACGCAGATGCTAAATCTTTGTATGAGAAAGATATTCTCCAGAAAGCATCGGGAGCTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGTAAAAGTTAACGGAGGCAGCATCCACCCCATTTCACATGGTACTCAAAAGTCTGGTCCAGCTGAAGTTAATCATAAAAAGGTTAGTGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAGTAACCAGAAAAAGGCCTCAAGCACAAGGAGTTGATGATTCTAAGAAAGGTTTGAGTGCAAGTAACAGTTTGGAACAGAGAAATCACAGAATTAAACCAGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCCGAAGCTGCCAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCGTGGAGAGCATTTTCGGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCAAGAATTACCGAAAATATTCAAAAATGCTTTATCTTCTACCCTCCTTGTTGACATCATCAAGTGTCTTTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTACATGGAGCATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGGAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATCGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1254 0.4139 MLQFTKASSSRLTGSSPGLYGLSKINDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKVGKSEVKVNGGSIHPISHGTQKSGPAEVNHKKVSEQQIPVKESLITEEVDSRDTVTRKRPQAQGVDDSKKGLSASNSLEQRNHRIKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRAFSGDLALQARLLKAISPQELPKIFKNALSSTLLVDIIKCLSSFFTEDMDLVVSYMEHLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01997 417 Gene3D Tetratricopeptide repeat domain 37 142 IPR011990 GO:0005515
Viun7g01997 417 ProSiteProfiles TPR repeat profile. 44 77 IPR019734 GO:0005515
Viun7g01997 417 Pfam Potential Monad-binding region of RPAP3 293 382 IPR025986 -
Viun7g01997 417 Pfam Tetratricopeptide repeat 79 107 IPR019734 GO:0005515
Viun7g01997 417 SUPERFAMILY TPR-like 40 156 IPR011990 GO:0005515
Viun7g01997 417 MobiDBLite consensus disorder prediction 224 244 - -
Viun7g01997 417 PANTHER OS05G0129900 PROTEIN 18 416 - -
Viun7g01997 417 MobiDBLite consensus disorder prediction 174 260 - -
Viun7g01997 417 SMART tpr_5 78 110 IPR019734 GO:0005515
Viun7g01997 417 SMART tpr_5 111 144 IPR019734 GO:0005515
Viun7g01997 417 SMART tpr_5 44 77 IPR019734 GO:0005515
Viun7g01997 417 ProSiteProfiles TPR repeat profile. 111 144 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01997 Viun-Chr7 24913230 24918324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01997 48 114 U-box Gene Family AT3G07370 39.706 1.07e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01997 K23002 - gmx:100784528 669.848