Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01996 ATGGGATTCCTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGATAAAACACAAACAGTGAAGTCACAACAGGAAAATCAATTCACAAAAGCTTCATCTTCTCGACTGACTGGATCTTCTCCAGGATTGTACGGTTTATCAAAAATTAATGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGAAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGGAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTACGCAGATGCTAAATCTTTGTATGAGAAAGATATTCTCCAGAAAGCATCGGGAGCTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGTAAAAGTTAACGGAGGCAGCATCCACCCCATTTCACATGGTACTCAAAAGTCTGGTCCAGCTGAAGTTAATCATAAAAAGGTTAGTGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAGTAACCAGAAAAAGGCCTCAAGCACAAGGAGTTGATGATTCTAAGAAAGGTTTGAGTGCAAGTAACAGTTTGGAACAGAGAAATCACAGAATTAAACCAGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCCGAAGCTGCCAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCGTGGAGAGCATTTTCGGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCAAGAATTACCGAAAATATTCAAAAATGCTTTATCTTCTACCCTCCTTGTTGACATCATCAAGTGTCTTTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTACATGGAGCATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGGAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATCGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1329 0.4123 MGFLNDLQDWELSRKDKTQTVKSQQENQFTKASSSRLTGSSPGLYGLSKINDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKVGKSEVKVNGGSIHPISHGTQKSGPAEVNHKKVSEQQIPVKESLITEEVDSRDTVTRKRPQAQGVDDSKKGLSASNSLEQRNHRIKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRAFSGDLALQARLLKAISPQELPKIFKNALSSTLLVDIIKCLSSFFTEDMDLVVSYMEHLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01996 442 ProSiteProfiles TPR repeat profile. 136 169 IPR019734 GO:0005515
Viun7g01996 442 PANTHER OS05G0129900 PROTEIN 2 441 - -
Viun7g01996 442 SMART tpr_5 136 169 IPR019734 GO:0005515
Viun7g01996 442 SMART tpr_5 69 102 IPR019734 GO:0005515
Viun7g01996 442 SMART tpr_5 103 135 IPR019734 GO:0005515
Viun7g01996 442 SUPERFAMILY TPR-like 65 181 IPR011990 GO:0005515
Viun7g01996 442 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Viun7g01996 442 MobiDBLite consensus disorder prediction 22 44 - -
Viun7g01996 442 Pfam Tetratricopeptide repeat 104 132 IPR019734 GO:0005515
Viun7g01996 442 Gene3D Tetratricopeptide repeat domain 62 167 IPR011990 GO:0005515
Viun7g01996 442 Pfam Potential Monad-binding region of RPAP3 318 407 IPR025986 -
Viun7g01996 442 MobiDBLite consensus disorder prediction 199 293 - -
Viun7g01996 442 MobiDBLite consensus disorder prediction 14 44 - -
Viun7g01996 442 MobiDBLite consensus disorder prediction 249 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01996 Viun-Chr7 24913016 24918324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01996 73 139 U-box Gene Family AT3G07370 39.706 1.21e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01996 K23002 - gmx:100784528 697.967