Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01995 ATGGATTTCCAGGGATTCCTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGATAAAACACAAACAGTGAAGTCACAACAGGAAAATCAATTCACAAAAGCTTCATCTTCTCGACTGACTGGATCTTCTCCAGGATTGTACGGTTTATCAAAAATTAATGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGAAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGGAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTACGCAGATGCTAAATCTTTGTATGAGAAAGATATTCTCCAGAAAGCATCGGGAGCTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGTAAAAGTTAACGGAGGCAGCATCCACCCCATTTCACATGGTACTCAAAAGTCTGGTCCAGCTGAAGTTAATCATAAAAAGGTTAGTGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAGTAACCAGAAAAAGGCCTCAAGCACAAGGAGTTGATGATTCTAAGAAAGGTTTGAGTGCAAGTAACAGTTTGGAACAGAGAAATCACAGAATTAAACCAGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCCGAAGCTGCCAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCGTGGAGAGCATTTTCGGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCAAGAATTACCGAAAATATTCAAAAATGCTTTATCTTCTACCCTCCTTGTTGACATCATCAAGTGTCTTTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTACATGGAGCATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGGAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATCGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1338 0.4126 MDFQGFLNDLQDWELSRKDKTQTVKSQQENQFTKASSSRLTGSSPGLYGLSKINDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKVGKSEVKVNGGSIHPISHGTQKSGPAEVNHKKVSEQQIPVKESLITEEVDSRDTVTRKRPQAQGVDDSKKGLSASNSLEQRNHRIKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRAFSGDLALQARLLKAISPQELPKIFKNALSSTLLVDIIKCLSSFFTEDMDLVVSYMEHLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01995 445 ProSiteProfiles TPR repeat profile. 139 172 IPR019734 GO:0005515
Viun7g01995 445 Pfam Potential Monad-binding region of RPAP3 321 410 IPR025986 -
Viun7g01995 445 SUPERFAMILY TPR-like 68 184 IPR011990 GO:0005515
Viun7g01995 445 PANTHER OS05G0129900 PROTEIN 1 444 - -
Viun7g01995 445 MobiDBLite consensus disorder prediction 252 272 - -
Viun7g01995 445 Gene3D Tetratricopeptide repeat domain 65 170 IPR011990 GO:0005515
Viun7g01995 445 MobiDBLite consensus disorder prediction 25 43 - -
Viun7g01995 445 MobiDBLite consensus disorder prediction 18 43 - -
Viun7g01995 445 ProSiteProfiles TPR repeat profile. 72 105 IPR019734 GO:0005515
Viun7g01995 445 SMART tpr_5 139 172 IPR019734 GO:0005515
Viun7g01995 445 SMART tpr_5 72 105 IPR019734 GO:0005515
Viun7g01995 445 SMART tpr_5 106 138 IPR019734 GO:0005515
Viun7g01995 445 Pfam Tetratricopeptide repeat 107 135 IPR019734 GO:0005515
Viun7g01995 445 MobiDBLite consensus disorder prediction 202 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01995 Viun-Chr7 24912996 24918324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01995 76 142 U-box Gene Family AT3G07370 39.706 1.20e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01995 K23002 - gmx:100784528 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01995 7 24912996 24918324 Viun7g01995 7 24912996 24918324 ECH