Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01994 ATGGATTTCCAGGGATTCCTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGATAAAACACAAACAGTGAAGTCACAACAGGAAAATGTTGGATTGTACGGTTTATCAAAAATTAATGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGAAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGGAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAGATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTACGCAGATGCTAAATCTTTGTATGAGAAAGATATTCTCCAGAAAGCATCGGGAGCTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGTAAAAGTTAACGGAGGCAGCATCCACCCCATTTCACATGGTACTCAAAAGTCTGGTCCAGCTGAAGTTAATCATAAAAAGGTTAGTGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAGTAACCAGAAAAAGGCCTCAAGCACAAGGAGTTGATGATTCTAAGAAAGGTTTGAGTGCAAGTAACAGTTTGGAACAGAGAAATCACAGAATTAAACCAGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCCGAAGCTGCCAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCGTGGAGAGCATTTTCGGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCAAGAATTACCGAAAATATTCAAAAATGCTTTATCTTCTACCCTCCTTGTTGACATCATCAAGTGTCTTTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTACATGGAGCATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGGAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATCGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1296 0.412 MDFQGFLNDLQDWELSRKDKTQTVKSQQENVGLYGLSKINDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKVGKSEVKVNGGSIHPISHGTQKSGPAEVNHKKVSEQQIPVKESLITEEVDSRDTVTRKRPQAQGVDDSKKGLSASNSLEQRNHRIKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRAFSGDLALQARLLKAISPQELPKIFKNALSSTLLVDIIKCLSSFFTEDMDLVVSYMEHLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01994 431 Gene3D Tetratricopeptide repeat domain 51 156 IPR011990 GO:0005515
Viun7g01994 431 Pfam Tetratricopeptide repeat 93 121 IPR019734 GO:0005515
Viun7g01994 431 ProSiteProfiles TPR repeat profile. 58 91 IPR019734 GO:0005515
Viun7g01994 431 MobiDBLite consensus disorder prediction 238 258 - -
Viun7g01994 431 Pfam Potential Monad-binding region of RPAP3 307 396 IPR025986 -
Viun7g01994 431 SUPERFAMILY TPR-like 54 170 IPR011990 GO:0005515
Viun7g01994 431 SMART tpr_5 125 158 IPR019734 GO:0005515
Viun7g01994 431 SMART tpr_5 58 91 IPR019734 GO:0005515
Viun7g01994 431 SMART tpr_5 92 124 IPR019734 GO:0005515
Viun7g01994 431 MobiDBLite consensus disorder prediction 188 274 - -
Viun7g01994 431 ProSiteProfiles TPR repeat profile. 125 158 IPR019734 GO:0005515
Viun7g01994 431 PANTHER OS05G0129900 PROTEIN 1 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01994 Viun-Chr7 24912996 24918324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01994 62 128 U-box Gene Family AT3G07370 39.706 1.24e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01994 K23002 - gmx:100784528 698.738