Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01986 ATGGAGAAGAAAGAGGAGATAACGCTTCCATTGCCATCCGAGACCCATTTCAAGAACCTTCCTAATGTTTCCTCCACCGCAATGCCTGCTGGGTCCCACAAAGGACACTGTTCTCCGGGTGATGACTCCGACAGCTTCTATGATAAACTCGTTGAGTTGTTGGAGTCTTCTGGACTCACTCTCATTTTCAATGTTCGAGAAACACTGCTGGACTTGTACCTCTTTTACTTGGAGGTGACAAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAGTGGGGTGAAGTTGTGATTGCCCTGAAATTGGAAGGGAATAGTGTGAAGCTATGTGCTCAAGTTGAAAGGCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTGAAAAGCTAGCTTTCCGATCTGCCACCAACAAAGAAGAAGGTCCTATTAGGAAGAAGAGGATTTCAACTGCGAGTGTGCCTCATATGGTGGATAGTAACGATGGTGAGAAGGCCACTGAAGTGTCCAAGCAATACTCTTGCCACATGACAGGGACTGGGTATGTGGAGCAGCCTGTGGTTTTACCAACACCTCCGAAAGAAAAGAAGAAACGGCGAGGTGCCCCGGTGGGAAGAAAAACTGCATATCAGATATTCCTCAAGCACGAATGTGCTCGGTTGAAAACTTGCAATCAGGTCTTAGATGGAAAAATCCTGAGTATGGCTATTCATTCATGGAGGACCATGTCTGAAATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAAGAAATTAAGGAAGCAATGGTTAGACGCAGTACACAGCAGAGCAGCCAAGAGAGCAGGGAAGAGAAGTGGTCTAGTATTTGTGGTGATTACCATGTAACTTTGCAACCTGAAGCAGGTGTAGCTCTTAAAGTGACTGAAAAAGCACCAATGGATCCTTCATTTCAGATGGATTGGGATGGTAATTGTCCACTTGATTTTGCAACTAGGGAATCTGAGTAA 1017 0.4503 MEKKEEITLPLPSETHFKNLPNVSSTAMPAGSHKGHCSPGDDSDSFYDKLVELLESSGLTLIFNVRETLLDLYLFYLEVTRRGGYHQVGREKKWGEVVIALKLEGNSVKLCAQVERLYSHLLYQFEQLYFYRRPEKLAFRSATNKEEGPIRKKRISTASVPHMVDSNDGEKATEVSKQYSCHMTGTGYVEQPVVLPTPPKEKKKRRGAPVGRKTAYQIFLKHECARLKTCNQVLDGKILSMAIHSWRTMSEIEKQPYVEESKKNKEEIKEAMVRRSTQQSSQESREEKWSSICGDYHVTLQPEAGVALKVTEKAPMDPSFQMDWDGNCPLDFATRESE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01986 338 SMART bright_3 41 131 IPR001606 GO:0003677
Viun7g01986 338 Gene3D High mobility group box domain 197 293 IPR036910 -
Viun7g01986 338 SUPERFAMILY HMG-box 192 272 IPR036910 -
Viun7g01986 338 CDD HMG-box_SF 213 267 - -
Viun7g01986 338 Gene3D - 33 148 IPR036431 GO:0003677
Viun7g01986 338 MobiDBLite consensus disorder prediction 190 209 - -
Viun7g01986 338 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Viun7g01986 338 Pfam HMG-box domain 211 273 IPR009071 -
Viun7g01986 338 SUPERFAMILY ARID-like 42 135 IPR036431 GO:0003677
Viun7g01986 338 SMART ARID_2 37 126 - -
Viun7g01986 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 42 283 - -
Viun7g01986 338 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01986 Viun-Chr7 24857371 24859812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01986 42 273 ARID Transcription Factor Family AT3G13350 24.427 1.11e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun7g01986 ARID 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01986 - - var:108325455 593.578