Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01985 ATGGAGAAGAAAGAGGAGATAACGCTTCCATTGCCATCCGAGACCCATTTCAAGAACCTTCCTAATGTTTCCTCCACCGCAATGCCTGCTGGGTCCCACAAAGGACACTGTTCTCCGGGTGATGACTCCGACAGCTTCTATGATAAACTCGTTGAGTTGTTGGAGTCTTCTGGACTCACTCTCATTTTCAATGTTCGAGAAACACTGCTGGACTTGTACCTCTTTTACTTGGAGGTGACAAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAGTGGGGTGAAGTTGTGATTGCCCTGAAATTGGAAGGGAATAGTGTGAAGCTATGTGCTCAAGTTGAAAGGCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTGAAAAGCTAGCTTTCCGATCTGCCACCAACAAAGGCTCTTTAGAAGAAGGTCCTATTAGGAAGAAGAGGATTTCAACTGCGAGTGTGCCTCATATGGTGGATAGTAACGATGGTGAGAAGGCCACTGAAGTGTCCAAGCAATACTCTTGCCACATGACAGGGACTGGGTATGTGGAGCAGCCTGTGGTTTTACCAACACCTCCGAAAGAAAAGAAGAAACGGCGAGGTGCCCCGGTGGGAAGAAAAACTGCATATCAGATATTCCTCAAGCACGAATGTGCTCGGTTGAAAACTTGCAATCAGGTCTTAGATGGAAAAATCCTGAGTATGGCTATTCATTCATGGAGGACCATGTCTGAAATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAAGAAATTAAGGAAGCAATGGTTAGACGCAGTACACAGCAGAGCAGCCAAGAGAGCAGGGAAGAGAAGTGGTCTAGTATTTGTGGTGATTACCATGTAACTTTGCAACCTGAAGCAGGTGTAGCTCTTAAAGTGACTGAAAAAGCACCAATGGATCCTTCATTTCAGATGGATTGGGATGGTAATTGTCCACTTGATTTTGCAACTAGGGAATCTGAGTAA 1026 0.4503 MEKKEEITLPLPSETHFKNLPNVSSTAMPAGSHKGHCSPGDDSDSFYDKLVELLESSGLTLIFNVRETLLDLYLFYLEVTRRGGYHQVGREKKWGEVVIALKLEGNSVKLCAQVERLYSHLLYQFEQLYFYRRPEKLAFRSATNKGSLEEGPIRKKRISTASVPHMVDSNDGEKATEVSKQYSCHMTGTGYVEQPVVLPTPPKEKKKRRGAPVGRKTAYQIFLKHECARLKTCNQVLDGKILSMAIHSWRTMSEIEKQPYVEESKKNKEEIKEAMVRRSTQQSSQESREEKWSSICGDYHVTLQPEAGVALKVTEKAPMDPSFQMDWDGNCPLDFATRESE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01985 341 SMART bright_3 41 131 IPR001606 GO:0003677
Viun7g01985 341 Gene3D High mobility group box domain 201 277 IPR036910 -
Viun7g01985 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 42 286 - -
Viun7g01985 341 SUPERFAMILY HMG-box 195 275 IPR036910 -
Viun7g01985 341 CDD HMG-box_SF 216 270 - -
Viun7g01985 341 MobiDBLite consensus disorder prediction 193 212 - -
Viun7g01985 341 SUPERFAMILY ARID-like 42 135 IPR036431 GO:0003677
Viun7g01985 341 SMART ARID_2 37 126 - -
Viun7g01985 341 Pfam HMG-box domain 214 276 IPR009071 -
Viun7g01985 341 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Viun7g01985 341 Gene3D - 33 146 IPR036431 GO:0003677
Viun7g01985 341 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01985 Viun-Chr7 24857371 24859813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01985 42 276 ARID Transcription Factor Family AT3G13350 24.427 6.39e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun7g01985 ARID 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01985 - - var:108325455 600.127