Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01984 ATGGAGAAGAAAGAGGAGATAACGCTTCCATTGCCATCCGAGACCCATTTCAAGAACCTTCCTAATGTTTCCTCCACCGCAATGCCTGCTGGGTCCCACAAAGGACACTGTTCTCCGGGTGATGACTCCGACAGCTTCTATGATAAACTCGTTGAGTTGTTGGAGTCTTCTGGACTCACTCTCATTTTCAATGTTCGAGAAACACTGCTGGACTTGTACCTCTTTTACTTGGAGGTGACAAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAGTGGGGTGAAGTTGTGATTGCCCTGAAATTGGAAGGGAATAGTGTGAAGCTATGTGCTCAAGTTGAAAGGCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTGAAAAGCTAGCTTTCCGATCTGCCACCAACAAAGAAGGTCCTATTAGGAAGAAGAGGATTTCAACTGCGAGTGTGCCTCATATGGTGGATAGTAACGATGGTGAGAAGGCCACTGAAGTGTCCAAGCAATACTCTTGCCACATGACAGGGACTGGGTATGTGGAGCAGCCTGTGGTTTTACCAACACCTCCGAAAGAAAAGAAGAAACGGCGAGGTGCCCCGGTGGGAAGAAAAACTGCATATCAGATATTCCTCAAGCACGAATGTGCTCGGTTGAAAACTTGCAATCAGGTCTTAGATGGAAAAATCCTGAGTATGGCTATTCATTCATGGAGGACCATGTCTGAAATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAAGAAATTAAGGAAGCAATGGTTAGACGCAGTACACAGCAGAGCAGCCAAGAGAGCAGGGAAGAGAAGTGGTCTAGTATTTGTGGTGATTACCATGTAACTTTGCAACCTGAAGCAGGTGTAGCTCTTAAAGTGACTGAAAAAGCACCAATGGATCCTTCATTTCAGATGGATTGGGATGGTAATTGTCCACTTGATTTTGCAACTAGGGAATCTGAGTAA 1014 0.4507 MEKKEEITLPLPSETHFKNLPNVSSTAMPAGSHKGHCSPGDDSDSFYDKLVELLESSGLTLIFNVRETLLDLYLFYLEVTRRGGYHQVGREKKWGEVVIALKLEGNSVKLCAQVERLYSHLLYQFEQLYFYRRPEKLAFRSATNKEGPIRKKRISTASVPHMVDSNDGEKATEVSKQYSCHMTGTGYVEQPVVLPTPPKEKKKRRGAPVGRKTAYQIFLKHECARLKTCNQVLDGKILSMAIHSWRTMSEIEKQPYVEESKKNKEEIKEAMVRRSTQQSSQESREEKWSSICGDYHVTLQPEAGVALKVTEKAPMDPSFQMDWDGNCPLDFATRESE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01984 337 SMART bright_3 41 131 IPR001606 GO:0003677
Viun7g01984 337 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 42 282 - -
Viun7g01984 337 SUPERFAMILY HMG-box 191 271 IPR036910 -
Viun7g01984 337 Pfam HMG-box domain 210 272 IPR009071 -
Viun7g01984 337 SUPERFAMILY ARID-like 42 135 IPR036431 GO:0003677
Viun7g01984 337 CDD HMG-box_SF 212 266 - -
Viun7g01984 337 Gene3D High mobility group box domain 196 292 IPR036910 -
Viun7g01984 337 MobiDBLite consensus disorder prediction 189 208 - -
Viun7g01984 337 SMART ARID_2 37 126 - -
Viun7g01984 337 Gene3D - 33 147 IPR036431 GO:0003677
Viun7g01984 337 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Viun7g01984 337 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01984 Viun-Chr7 24857371 24859813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01984 42 272 ARID Transcription Factor Family AT3G13350 24.809 1.31e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun7g01984 ARID 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01984 - - var:108325455 591.267