Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01975 ATGGTTCCGAAGCCTAAAACCAAAACCAAAGGTGCCTCCGCCTCCGCCGTCTTCTTCAAACCGGGCACTGTGGTGGAAGTAAGCTCAGAGGATGAAGGCTTCCGTGGTTCTTGGTTTTCCGGCACCGTCATCCGGCATCTTCCTTCTGACAGGTTCCTAATAGAGTACCACAACCTGATGGCAGACGATAAAAGCTCAAAACGTTTGAGGGAAATCTTGGATATACGTCAACTGCGGCCCATTCTCCCACCGGAGATAGGCGAAGTATTCAAATTTGGGGATGAGGTTGACGCATACTACAACGACGGTTGGTGGGAGGGTTTTATAACTGAGGAATTAGAGAATGACAGATTTGCAGTGTATTTCAGGGCGTCCAAGGAGCAATTGGTGTTTTCCAAAGAACAACTCAGAATCCATCGAGAATGGTTCGATCACAAATGGGTCCCGCCATTCCAACAGGAAAAGGATGAATCCAATGAAGCTGCAAAGCCTGATGAATCCAAAGAAGCTGCAAAGCCCGATGAATCCAATGAAGCTGCAAAGCCTGATGAATTTGGCCAAGGGGCTACAGTCGAGGTTAGCAATGATGAAGATGGGTTCAGTGGAGCTTGGTTTGAAGCCACTATAGTTGAGGCAAAGGGAAATGACAAGTTCGTTGTTGAGTACCAGACTCTGTTAGCTGATGATGATTCTAATCTTTTGAGAGAGGAGATTGATGCCTTGCACATAAGGCCTCCTCCACCCAATACTAATCTTGATGGTCAATTTAGTCTTCTTGATGAAGTCGATGCCCTGTACAATGACGGTTGGTGGGTGGGTGTGATTTCTAAAGTTCTTGCGGACTCCAAGTATGTGGTTTACTTCAGGTCTTCTAATGAGGAACTAGAGTTTCATCACTCCCAATTGCGGCTGCATCAGGACTGGATTCATGGCAAATGGATTATGCCTTGTAAGGTGATGAAGTTGTGA 969 0.4634 MVPKPKTKTKGASASAVFFKPGTVVEVSSEDEGFRGSWFSGTVIRHLPSDRFLIEYHNLMADDKSSKRLREILDIRQLRPILPPEIGEVFKFGDEVDAYYNDGWWEGFITEELENDRFAVYFRASKEQLVFSKEQLRIHREWFDHKWVPPFQQEKDESNEAAKPDESKEAAKPDESNEAAKPDEFGQGATVEVSNDEDGFSGAWFEATIVEAKGNDKFVVEYQTLLADDDSNLLREEIDALHIRPPPPNTNLDGQFSLLDEVDALYNDGWWVGVISKVLADSKYVVYFRSSNEELEFHHSQLRLHQDWIHGKWIMPCKVMKL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01975 322 SMART agenet_At_2 88 144 IPR014002 -
Viun7g01975 322 SMART agenet_At_2 17 86 IPR014002 -
Viun7g01975 322 SMART agenet_At_2 183 251 IPR014002 -
Viun7g01975 322 SMART agenet_At_2 254 310 IPR014002 -
Viun7g01975 322 MobiDBLite consensus disorder prediction 153 181 - -
Viun7g01975 322 CDD Tudor_Agenet_AtDUF_rpt2_4 258 304 - -
Viun7g01975 322 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 160 318 - -
Viun7g01975 322 MobiDBLite consensus disorder prediction 153 188 - -
Viun7g01975 322 CDD Tudor_Agenet_AtDUF_rpt1_3 188 248 - -
Viun7g01975 322 Gene3D - 173 256 - -
Viun7g01975 322 CDD Tudor_Agenet_AtDUF_rpt2_4 93 138 - -
Viun7g01975 322 CDD Tudor_Agenet_AtDUF_rpt1_3 19 83 - -
Viun7g01975 322 Pfam Agenet domain 93 151 IPR008395 -
Viun7g01975 322 Pfam Agenet domain 260 317 IPR008395 -
Viun7g01975 322 Pfam Agenet domain 188 248 IPR008395 -
Viun7g01975 322 Pfam Agenet domain 22 83 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01975 Viun-Chr7 24788473 24791313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01975 197 308 PHD Transcription Factor Family AT5G58610 29.104 5.70e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01975 - - vum:124823040 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01975 7 24788473 24791313 Viun7g01975 7 24788473 24791313 ECH