Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01960 ATGCCAGCAAGGAAATATTACTGCGACTACTGTGACAAGCAATTCCAAGACACACCAGCTGATCGGAAACGACACGTTAAGGGTATTCAACACCTCCAAGCCAAAGCTCGCTGGTACGATTCCTTCAATCAACACCACCAACAAATCCCTAATCCTCCCCTTTGCTTTCACTTCCTCAACACGGGTTTTTGCCGTTACGGCCACTCTTGCAAGTACCTTCATCCCATTCCCAACAATGCTACACACCACGCTCCAATCCCTTCACCAGATATATGTGCAATTGTGCATGCAGGTAATGTGGTAGGAGTGTCATTGGGAAATTTGCCCCCGTCGCTGCAGCCTCCGCCGGAGGCTGGATATCCCCATCTCCCCTTTGTGGATTGGGGATAG 390 0.5 MPARKYYCDYCDKQFQDTPADRKRHVKGIQHLQAKARWYDSFNQHHQQIPNPPLCFHFLNTGFCRYGHSCKYLHPIPNNATHHAPIPSPDICAIVHAGNVVGVSLGNLPPSLQPPPEAGYPHLPFVDWG 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01960 129 PANTHER NUCLEASE-RELATED 1 129 - -
Viun7g01960 129 Gene3D Classic Zinc Finger 3 50 - -
Viun7g01960 129 SUPERFAMILY CCCH zinc finger 49 77 IPR036855 GO:0046872
Viun7g01960 129 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Viun7g01960 129 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Viun7g01960 129 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Viun7g01960 129 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Viun7g01960 129 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Viun7g01960 129 SUPERFAMILY beta-beta-alpha zinc fingers 4 49 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01960 Viun-Chr7 24718512 24719261 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun7g01960 zf-U1 9.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01960 K13152 - gmx:100527203 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01960 7 24718512 24719261 Viun7g01960 7 24718512 24719261 ECH