Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01943 ATGGCTGCCATGAAGCTCATTGCAATATGTCAGTCAGGAGGCAAGTTTTTGACTGAGAAAGACGGTTGTTTGTCATATAAAGGCGGTGATGCTCATGCTATAGACATTGATGATGAAATGAAGTTTGACGAGTTCAAGGTGGAAGTGGCCGAAATGTTTAATATTAGAACTGATAGCATGTCTATCAAGTATTTCCTTCCAGGGAATAAGAAGACTCTCATTACTATATCTAATGACAAGGATCTGAAACGAATGATTAAATTTCATGGGAGTTCTTCTACTGTTGATATTTATATCCTTTTTGAAGAGGTAGTTGCCCTTGAGGTATCAAACATGCCTGGCAGTAGGTCAAGCAGAACAACCTTGTCTGAAACAGTAGCACCAGCACCACTAAATGCTTGTCACAGTCATATTGTTGATCCTGTGCTTGATGTTGTTCATGATACAAATCAAATTGATACAAATATGGATATGGACATGCTACCGGAAATTTCTCCCTCTCTCCCTCTTCAATCGTCAAACGAAGAGAAGTATGCCAAGGGGGCACAGCAGTGGCAGAATACTATAACAGGGGTGGGTCAAAGGTTCAGTAGTGTACATGAATTTCGAGAATCCTTGCGTAAATATGCCATCGCTCATCAATTTGCTTTCAAATATAAGAAAAATGATAGTCATCGAGTAACTGTTAAATGCAAAGCAGATGGTTGTCCTTGGAGAATTCATGCATCAAGGTTGTCAACCACTCAATTGATATGTATCAAGAAAATGAATTCAACTCATACTTGTGATGGGGCTTTTGCAACAACAGGGCATCAAGCAACTAGGAGTTGGGTGGCCAGTATTATAAAGGAGAAGTTGAAAGATTTTCCGGATTACAAACCTAAGGACATTGTCAATGACATCAAACAGGAATATGGAATTCAACTGAACTATTTTCAAGCATGGCGTGGGAAAGAGATTGCTAAGGAGCAGCTTCAGGGTTCTTATAAAGAGGCATATAGTCAGTTACCTTTCTTCTGTGAAAAATTAATGGAGGCTAATCCTGGTAGTCTTGCCATGTGCACAACAAAGGAAGACTCAAGCTTCGACCGTCTCTTTGTATCACTTCATGCTTTGTTGCATGGCTTCCAACAAGGTTGCCGACCACTGATTTTCCTTGATAGCATTCCATTGAGATCAAAGTACCAAGGAACACTATTAGCAGCGACTGCTGCAGATGCTGATGATGGTGTGTATCCCGTTGCCTTTGCCATTGTTGATGATGCGGAATGTGATGATAGCTGGCATTGGTTCTTACTTCAACTCAAATCGGTGCTTTCAACATCTTGTCCCATAACGTTTGTCGCAGACAGAGAGAAGGGGCTGAAAACCTCAATTGCAGAGATATTTGAAGGTTCATTTCATGCATACTGCCTGCGATACTTGACTGAGCAACTTTTTAGAGACTTGAAAGGGCAGTTTTCTCATGAGGTAAAGCGACTCATGATTGAGGATTTATATGCTGCTGCTTATTCTACCAAACCAGAAGGTTTTCACAACTCAATGGAGAGCATTAAAAAGATTTCTGAAGAAGCCTACAATTGGATTATTCAAAGTGAACCTCAGAACTGGGCAAATTCATTTTTTCAGGGTACTAGATATAATCACATGACATCAAACTTTGGGGAGCTCTTCTACAGTTGGGTAGCTGATGCAGATGAGTTGCCGATAACACAGATGGTCGATGTAATTAGGGGTAAGATTATGGAGTTGATAGTTACCAGAAAGACGACTTCGGATCAATGGGAAACTAGGTTGAGTCCATCCATGGAAGATAAGCTTAAGAAAGAAAGCCAAAAAAACCATTCACTTTCAGTTCTGCAATCAACATGTAGCACCTATGAGGTTTGTGGGGACACAACTGAGGTGGTTGATATTGACAGATGGGAATGTAGTTGTAAAGCCTGGCAACTAACTGGTGTGCCATGTTGCCATGCCATTGCCGTAATTGGTGGCATTGGCCAAAGTGTTTATGATTATTGCTCCAGATACTGTACAACCGAGAGCTACAGGTTGACATACTCGGAGATTGTGCATCCAATTTCAGACGTGGAATTGTCTGCTTCGAAAGATTCTCAGCTTGTGGTAACGGTAACACCTCCTCCCACCAAAAGACCCCCTGGTCGACCAGCTACAAAGCGATTTGGACCTCAAGAAGTAGTCAAGCGCCATCTCCATTGCAGCCGATGCAAGGGACTTGGTCATAACAAGTCTACTTGCAAGGAGTAA 2268 0.4158 MAAMKLIAICQSGGKFLTEKDGCLSYKGGDAHAIDIDDEMKFDEFKVEVAEMFNIRTDSMSIKYFLPGNKKTLITISNDKDLKRMIKFHGSSSTVDIYILFEEVVALEVSNMPGSRSSRTTLSETVAPAPLNACHSHIVDPVLDVVHDTNQIDTNMDMDMLPEISPSLPLQSSNEEKYAKGAQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAFKYKKNDSHRVTVKCKADGCPWRIHASRLSTTQLICIKKMNSTHTCDGAFATTGHQATRSWVASIIKEKLKDFPDYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQLPFFCEKLMEANPGSLAMCTTKEDSSFDRLFVSLHALLHGFQQGCRPLIFLDSIPLRSKYQGTLLAATAADADDGVYPVAFAIVDDAECDDSWHWFLLQLKSVLSTSCPITFVADREKGLKTSIAEIFEGSFHAYCLRYLTEQLFRDLKGQFSHEVKRLMIEDLYAAAYSTKPEGFHNSMESIKKISEEAYNWIIQSEPQNWANSFFQGTRYNHMTSNFGELFYSWVADADELPITQMVDVIRGKIMELIVTRKTTSDQWETRLSPSMEDKLKKESQKNHSLSVLQSTCSTYEVCGDTTEVVDIDRWECSCKAWQLTGVPCCHAIAVIGGIGQSVYDYCSRYCTTESYRLTYSEIVHPISDVELSASKDSQLVVTVTPPPTKRPPGRPATKRFGPQEVVKRHLHCSRCKGLGHNKSTCKE 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01943 755 CDD PB1_UP2 9 99 - -
Viun7g01943 755 SMART PB1_new 19 102 IPR000270 GO:0005515
Viun7g01943 755 Pfam PB1 domain 24 92 IPR000270 GO:0005515
Viun7g01943 755 SMART 26again6 642 669 IPR006564 GO:0008270
Viun7g01943 755 Pfam MULE transposase domain 385 475 IPR018289 -
Viun7g01943 755 PANTHER POLYPROTEIN, PUTATIVE-RELATED 180 726 - -
Viun7g01943 755 Pfam MuDR family transposase 188 253 IPR004332 -
Viun7g01943 755 ProSiteProfiles Zinc finger SWIM-type profile. 627 667 IPR007527 GO:0008270
Viun7g01943 755 Gene3D - 25 101 - -
Viun7g01943 755 SUPERFAMILY CAD & PB1 domains 21 94 - -
Viun7g01943 755 Pfam SWIM zinc finger 637 663 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01943 Viun-Chr7 24591753 24595282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01943 9 87 MAP Kinase Kinase Kinase AT2G35050 33.333 7.60e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01943 K17604 - gmx:100797259 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01943 7 24591753 24595282 Viun7g01943 7 24591753 24595282 ECH