Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01936 ATGGCTAGGAAGAAGTTGAAACTTGCATTTATCTCTGATGAGATGACGAGGAAAAGTACATACAAGAGAAGGAAAAAGGGTATGATGAAGAAAGTGAATGAACTTGCCACCCTCTGCGGGATCTCAGTTTGTGCTATAATTTGTAATCCTTTGGATTCTGAGACAGAAGTTTGGCCAAATCCAGAAGTAGCGAACAAGGTGATGGAGAGGTTTAAGAATGCTTGTGTGGTGAACAAATGCAGGAATGTGAACCACGAAAGCTTCATGATGCAAAGGATCGTCAAAGCCCAAAATGAATTGAAGATGCAACGTCAAGACAACTATGAGAAGGAGATGACCTTGTCCATGTTTCAGTTCATGCTAGGTCAAAACCTGCCAAATATTACCGTTCAAGAAATCAAAGAAATCCACAAAATTATTGACAAAAATATAAGAGAGATTGAGAATAAGTTGGCTGCACTCAACTCTCAGTCTTTTTGA 480 0.3917 MARKKLKLAFISDEMTRKSTYKRRKKGMMKKVNELATLCGISVCAIICNPLDSETEVWPNPEVANKVMERFKNACVVNKCRNVNHESFMMQRIVKAQNELKMQRQDNYEKEMTLSMFQFMLGQNLPNITVQEIKEIHKIIDKNIREIENKLAALNSQSF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01936 159 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Viun7g01936 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun7g01936 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun7g01936 159 Coils Coil 130 157 - -
Viun7g01936 159 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 150 - -
Viun7g01936 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Viun7g01936 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Viun7g01936 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun7g01936 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01936 Viun-Chr7 24526022 24526501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01936 1 154 Type I MADS-box Gene Family AT5G48670 39.744 1.33e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun7g01936 SRF-TF 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01936 - - var:108324686 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01936 7 24526022 24526501 Viun7g01936 7 24526022 24526501 ECH