Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01934 ATGACTAGGCAGAAAGTGAAACTCGCGTATATCAGTGATTTGACGGCAAGGAAATCGACGTACAAGAAAAGGAAGAAAGGTATTATTAAGAAGGTGAGTGAACTGACGATTCTGTGTGGGATCTCAGCCTGCGCTATAATTTCAAGTCCTTTTGAAGCTAAGGCAGAGATTTGGCCAGATCCTGAGGGAGCGAAGAAAGTGATTGAGAAGTATCTGGATGCATCTGTGATTGATGAAAGCAAGAATGTGAACCAGGAGAGTTTCCTGATGCAGAGGATTGGCAGAGCCCAGGAACAGCTGAAGAAGCTGCGTCAGGAGAATGAGGAGAAGGAGAAGATCTTGTCCATCTTCAGGTACATGCAAGGTGAAGACCTCCCAACTGATATTCAAGAACTCAAACAACTCAAAAACCTCATTCAGAATACTATGAAGGAAACTAAAAACAAGATGGACGACCTCAATTCTGAGTCTGTGTAG 477 0.434 MTRQKVKLAYISDLTARKSTYKKRKKGIIKKVSELTILCGISACAIISSPFEAKAEIWPDPEGAKKVIEKYLDASVIDESKNVNQESFLMQRIGRAQEQLKKLRQENEEKEKILSIFRYMQGEDLPTDIQELKQLKNLIQNTMKETKNKMDDLNSESV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01934 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun7g01934 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun7g01934 158 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Viun7g01934 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun7g01934 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Viun7g01934 158 Coils Coil 86 113 - -
Viun7g01934 158 PANTHER MADS BOX PROTEIN 3 150 - -
Viun7g01934 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Viun7g01934 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Viun7g01934 158 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Viun7g01934 158 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01934 Viun-Chr7 24504628 24505598 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01934 3 123 Type I MADS-box Gene Family AT1G65300 44.262 3.70e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun7g01934 SRF-TF 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01934 - - var:108325536 262.692