Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01932 ATGCCTTTGTACGAGTTATACCGTCTGGCTAGAGAGAAGCTTGGTACAGAGAATAACAGCACACGTGCATCTGATCAATGTTCCTCACCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCTAGCCAGGGTCAGTCTAGTAAAGTTAGAAGGAGCCCATCTTGCAGGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCCAAGGGTAGAGACAAAGATGTAGGATATGGTGCCAACAGGATGGGAAAATTTAGAGATTTAGACTCTGGTTTGAATGAAATTTCAATGTCGGTGCCGTCCCGTGAAGTTGATTTCTGTCAAGATGAAGATGTGTTACCTTGGTTTGATGATTACACAACAATGGATGGTTCATTGCAACATGACTATGGTTCTGATTTCCTTCCTGCCCCAACTAGCTTTACCCTATTGGATAAAAAAAGTAATAGCAATATGGCTTTGAGGGATTCTCATAAAACTTCTGAAGAACAAGGGAATGTTTTCAAGGATTCTTCAGCTGAGCAAATTGGAACTGCCGAACCCAAAGCTAGCACCAGTCAGTTATACCCTCCGTCATTGCATCATTGTCAAACATCTTTTGTATCTTCAAGATCCAGAACATCAGATGTAACTGAAAATAACAATACTAGTAATGGAAACCAGGATGCCACTTATGGCGAAATTACCAATTTTCTATCTTCCTCAAGTGATTTTTCTAGCCCAAAGGGGAAGAAGCAAGAGCCACCTCTGCCTGGCAATGGTTCCAGTTCCACCGTAATGAATTTCTCCCATTTCGCTAGGCCTGCCGCAATGGTAAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGATCAGACAGTATGGAAATTAAGAATAAAGATGCAGCGGCAACTAGCAGCAATCCTCCTGAATCAATTGTTGTTGATTCAAGTGGTGAATGTCCAAAGGAACTGACCATGCGCTCTCAGCAGGTTGTGGATCAATCCAAGACTGATTTGAACACTTCACTGTCCAAAGCTGTTGAACAGAAGTCAGTGCTTTCTAAGCAGTCAGAGACTGCTTGTAATGAGAGTTCCACTAAGATTGACCAAATTGCAGATCAAGTTCTTGGTGACAGTGGTGCTAAAGGGCAGACAACTGCTGAAAAAAGTATGGAGGCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCTGACAGAGGTTCAGATGAGCCAAATAAAAATTTGAAGCGAAAAAGAAAAGACACCGATGATTCTGAGTGCCATAGTGAAGATGCTGAAGAAGAATCAGGGGGTGTTAAAAAGGCAGCTGGAGGGCGTGGAGGTACAGGTTCCAAGAGAACCCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGGCGAAGGGACAGAATCAACGAGAAGATGCGTGCGTTGCAAGAACTCATTCCAAATTGCAATAAGGTGGATAAAGCCTCAATGCTAGACGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATCTGGCTCCATTTTCACCTATGAGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGGTGGGAATGCCTGACATGAATGGTGGACCTTCAAGATTCCCTATGATTCAGGTGCCCCAAATGCAAGGAAGTCATATCCCTGTGGCCCATATGTCTGGACCTACTGCTTTACATGGGATGGCCGGATCAAATCTTTCAGGGCTCGGGCTTCCTGGACAAGGACATCCCATGCCAATGCCGCGGCCTACCGTGCTACCTTTTTCAGGAGGACCTGTCATGAATTCATCAGCTCTGGGACTACATGCCTGTGGATCATCAGGACTTGTTGGAACCGTGGATTCAGCTTCTGCATCTGGCTTAAAGGATCAAATGTCAAATGGTGTCCCACTAGTTAAGCAAAGCTCTGGTGGCCGTGACTCAACAAGTCAGAGGCCTACACAGGTATTGAAAGCATCTGTTGTTGGATTTGAGCAATCTGCTTTGGTTCATAATAGCGGTCATACCTCTGAGGCTAATGACAATGGAGCTCTTAATCCTTGTCCCAGCAGATAA 2172 0.4452 MPLYELYRLAREKLGTENNSTRASDQCSSPENDFFELVWENGQISSQGQSSKVRRSPSCRSLPSHCLPSHSPKGRDKDVGYGANRMGKFRDLDSGLNEISMSVPSREVDFCQDEDVLPWFDDYTTMDGSLQHDYGSDFLPAPTSFTLLDKKSNSNMALRDSHKTSEEQGNVFKDSSAEQIGTAEPKASTSQLYPPSLHHCQTSFVSSRSRTSDVTENNNTSNGNQDATYGEITNFLSSSSDFSSPKGKKQEPPLPGNGSSSTVMNFSHFARPAAMVRANLQNIGLKSGLSSARSDSMEIKNKDAAATSSNPPESIVVDSSGECPKELTMRSQQVVDQSKTDLNTSLSKAVEQKSVLSKQSETACNESSTKIDQIADQVLGDSGAKGQTTAEKSMEAAVASSSVCSGNGADRGSDEPNKNLKRKRKDTDDSECHSEDAEEESGGVKKAAGGRGGTGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHLAPFSPMSVGMHMGYGMGYGVGMPDMNGGPSRFPMIQVPQMQGSHIPVAHMSGPTALHGMAGSNLSGLGLPGQGHPMPMPRPTVLPFSGGPVMNSSALGLHACGSSGLVGTVDSASASGLKDQMSNGVPLVKQSSGGRDSTSQRPTQVLKASVVGFEQSALVHNSGHTSEANDNGALNPCPSR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01932 723 Gene3D - 455 518 IPR036638 GO:0046983
Viun7g01932 723 MobiDBLite consensus disorder prediction 45 81 - -
Viun7g01932 723 FunFam Basic helix-loop-helix transcription factor 455 518 - -
Viun7g01932 723 MobiDBLite consensus disorder prediction 170 246 - -
Viun7g01932 723 MobiDBLite consensus disorder prediction 156 263 - -
Viun7g01932 723 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
Viun7g01932 723 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Viun7g01932 723 MobiDBLite consensus disorder prediction 702 723 - -
Viun7g01932 723 MobiDBLite consensus disorder prediction 383 467 - -
Viun7g01932 723 MobiDBLite consensus disorder prediction 383 408 - -
Viun7g01932 723 SMART finulus 466 515 IPR011598 GO:0046983
Viun7g01932 723 PANTHER TRANSCRIPTION FACTOR PIF3 1 683 IPR044273 GO:0003700|GO:0006355
Viun7g01932 723 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 520 IPR036638 GO:0046983
Viun7g01932 723 MobiDBLite consensus disorder prediction 45 65 - -
Viun7g01932 723 MobiDBLite consensus disorder prediction 289 316 - -
Viun7g01932 723 CDD bHLH_AtPIF_like 460 522 IPR047265 -
Viun7g01932 723 MobiDBLite consensus disorder prediction 414 445 - -
Viun7g01932 723 MobiDBLite consensus disorder prediction 658 687 - -
Viun7g01932 723 MobiDBLite consensus disorder prediction 289 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01932 Viun-Chr7 24479241 24483641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01932 1 609 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.480 2.50e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g01932 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01932 K12126 - gmx:100794974 1149.81