Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01930 ATGGGAAGACACTCCTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGATGAGAAGCTTCTGGATTACATCACCAAACATGGTCATGGATGTTGGAGCTCAGTCCCCAAACTTGCTGGTCTGCAGAGGTGTGGGAAGAGTTGTAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGGAGGAGGAGAACATGATTATTGAACTCCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAACCTATGGAACTCGTGCCTCAAGAAGAAGCTGAGGCAAAGAAGCATTGACCCAAACACCCACAAACCACTCTCTGAGGTTGAGAACGACAAGGACATGCCACCCTCAACCGACAAAACCAATCACAAAGCCTCATTGGTTGATCAGCCACCAAAACCCTTGCCTTCTTCAGAGAGATACCCTCTTGAGGTTTCCACCAGTTCAACCCAGGAACTATTCCTAGATAGGTTTGCCGCTACCTCCCATGACAACAGTAGTTGCAGACCCTCTGATGTGGTAGTAGGACCATACTTCTCCTTCCACCACTTCAACTATGGAAACCCCAACCCATCTCTTTCTTTCATTCCACCCCCCACTTCTTCAGACCTTAACAATCCCACCATACCCTCCTCTATGCTGCATTCCATTTTCCCAACACAGGTGAAGCTCCAATCTAACCACAACCCTTCCATATCCCCCGATGCGGTTCAAAACTGGGAATCCGACAACACAAACAAAAGCAATGCCGGTATGCAGTTTCAAAGCAGCACAAACTTCCTTGACAACACTTGGGGGGTGGCAGAGTCTACGAAGGTTAACGTTAACAAAGATGCTCAAGTGCCCCTTCAGACAGAACAAGAGGATCTAAAATGGTCTGAGTATCTTAACACCCCATTTATTCTGGGAAACACACCGGAGAATCAAATCCAAACCTCTCAATCTATCTACAGTGAGGTCAAACCAGAAACAGGATTCATAACAGACGAGTCGTGTACCGGTTGGCACCATCCGCCACCAGCTTTTCAACTTTCCGATATATATAGCAAGAATCTGCAGAGATTTTCAGTGACTTTTGGACAAACCCTCTAA 1164 0.4648 MGRHSCCYKQKLRKGLWSPEEDEKLLDYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRSIDPNTHKPLSEVENDKDMPPSTDKTNHKASLVDQPPKPLPSSERYPLEVSTSSTQELFLDRFAATSHDNSSCRPSDVVVGPYFSFHHFNYGNPNPSLSFIPPPTSSDLNNPTIPSSMLHSIFPTQVKLQSNHNPSISPDAVQNWESDNTNKSNAGMQFQSSTNFLDNTWGVAESTKVNVNKDAQVPLQTEQEDLKWSEYLNTPFILGNTPENQIQTSQSIYSEVKPETGFITDESCTGWHHPPPAFQLSDIYSKNLQRFSVTFGQTL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01930 387 PANTHER MYB DOMAIN PROTEIN 55 1 296 - -
Viun7g01930 387 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun7g01930 387 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun7g01930 387 MobiDBLite consensus disorder prediction 119 143 - -
Viun7g01930 387 Gene3D - 11 67 - -
Viun7g01930 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Viun7g01930 387 FunFam Myb transcription factor 11 67 - -
Viun7g01930 387 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun7g01930 387 CDD SANT 17 61 IPR001005 -
Viun7g01930 387 SMART sant 66 114 IPR001005 -
Viun7g01930 387 SMART sant 13 63 IPR001005 -
Viun7g01930 387 FunFam MYB transcription factor 68 140 - -
Viun7g01930 387 Gene3D - 68 140 - -
Viun7g01930 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Viun7g01930 387 CDD SANT 69 109 IPR001005 -
Viun7g01930 387 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun7g01930 387 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun7g01930 387 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01930 Viun-Chr7 24453817 24455813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01930 1 387 MYB Transcription Factor Family AT1G09540 50.746 1.79e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun7g01930 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01930 K09422 - gmx:778072 602.438