Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01920 ATGGTTTCTTCTTCCACCATACCTCTCTCTTCTTCCATTTCTATATTCAAAAACCCCTCTCTCCAACTCCTCAGAAGACCAACCACCTCCGTTTCATTCAACACCCTTCCCCGTAACCACACGCTATCTTCCGTTCCTTCAGCCATTGCCACCCCCACTTCTTCCATTCTCACCCAACAACCCTTCGAGGGTTTAACTCTTGACGACGTTAGCAATGGCCTTCAATTTGGCTATGACCACCAACCCGACCACGTCAGCGACCACGAACTCGACATTTCCAAGTTGTCTTTACCTTCTTCCCTCGTTCACGCCCTACAAAAACGTGGAATCACAAGCCTCTTTCCCATTCAGAGAGCTGTGTTAGTGCCTGCACTAGAAGGTAGAGATATCATTGCTCGAGCAAAGACCGGCACTGGCAAAACATTAGCATTCGGAATTCCAATTCTCAAAGGCCTCACTCCCGATGATGATGAGCAAAGTTCTCACAGGAGGCATAGCAGGCTTCCCAAGGCATTGGTCCTAGCACCTACCAGGGAGTTAGCCAAGCAAGTTGAGAAGGAGATACAAGAATCTGCTCCTTACGTGAAAACGGTTTGTGTTTATGGGGGTGTTTCTTATGTAACACAGCAGAGTGCGCTTTCGCGAGGTGTTGATGTGGTGGTTGGAACACCGGGTAGAATAATTGATCTATTGAATGGAGGTAGCCTTACTCTGAGTGAGGTGCAGTATTTGGTGCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAGGTCATTTTGGATAAGGTCCCCGCGCAGCGCCAGACCATGCTGTTTTCTGCTACCATGCCTGGTTGGGTCAAGAAACTGTCCAGAAAGCATTTGAACAATCCTTTGACGATTGATTTGGTTGGGGAAGAAGAAGAAGAGAAACTTGCTGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACATCAAAACGGACAGTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACGCAGACAAAAAAGGATGCCGATGAAGTATCATTGGCATTAACGAGTAGTATAGCCTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCGAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGCACTGGGCGTGCAGGAAAAGAGGGTACTGCCATATTGATGTACACCAGTAGCCAGAAGAGAACAGTTAGATCCCTTGAGCATGATGTTGGCTGCAAATTTGAATTCATTAGTCCACCGGCTATGGAAGAAATTTTGGAGTCATCTGCTGAACAAGTTGTTGCTACACTTAGTAGAGTTCATCCAGAGTCTGTTAAGTTTTTTACTGCAACTGCGCAAAAACTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCTCTAGCGCAGATGAGTGGATTCTCTCGACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACACTTCAACTTACTCGAGATTCAGACACTTCTGGAAGATTTTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGATTAAAGGAGCTGTCTTTGATCTCCCGGAGGAAGTTGCTAGAGAGTTGCTCAAAAAGGAACTGCCTTCTGGAAACACTATTTCCAAAATCACCAAATTACCTCCTTTGCAAGACGATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCCGACAGAGACAGAAGTAACAGAAGGGGTTCTAGTTCTAGGGATCAAAGAGGCTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTCGGAAGAGGAGGTAGAAATTTCAGATCAGGCAACAACAGGTCTCGAATGGGAAAAAACAGCGGCGATGACTGGCTAATCGGAGGTGGACGATCAAACAGATTTTCATCATCAAACAGAGGCGGGCACGGAGGGGCCTGTTTTAATTGTGGACAACCTGGCCATCGAGCTGCAGACTGTCGCAAAAAACGAGACTTTTTCTAG 2205 0.454 MVSSSTIPLSSSISIFKNPSLQLLRRPTTSVSFNTLPRNHTLSSVPSAIATPTSSILTQQPFEGLTLDDVSNGLQFGYDHQPDHVSDHELDISKLSLPSSLVHALQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILKGLTPDDDEQSSHRRHSRLPKALVLAPTRELAKQVEKEIQESAPYVKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLNGGSLTLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKHLNNPLTIDLVGEEEEEKLAEGIKLYALSATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQKRTVRSLEHDVGCKFEFISPPAMEEILESSAEQVVATLSRVHPESVKFFTATAQKLVEEQGASALAAALAQMSGFSRPPSCRSLINHEQGWITLQLTRDSDTSGRFFSARSVTGFLSDVYSPAADEVGKIHLIADERIKGAVFDLPEEVARELLKKELPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSSSRDQRGFRSSRGWEGGQDSDDEFGRGGRNFRSGNNRSRMGKNSGDDWLIGGGRSNRFSSSNRGGHGGACFNCGQPGHRAADCRKKRDFF 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01920 734 Pfam Zinc knuckle 713 729 IPR001878 GO:0003676|GO:0008270
Viun7g01920 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 453 IPR027417 -
Viun7g01920 734 FunFam Nucleolar RNA helicase II 322 512 - -
Viun7g01920 734 CDD GUCT_Hera 529 608 - -
Viun7g01920 734 Pfam GUCT (NUC152) domain 521 621 IPR012562 GO:0003723|GO:0004386|GO:0005524
Viun7g01920 734 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 88 677 - -
Viun7g01920 734 SMART c2hcfinal6 713 729 IPR001878 GO:0003676|GO:0008270
Viun7g01920 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 474 IPR001650 -
Viun7g01920 734 SUPERFAMILY Retrovirus zinc finger-like domains 694 732 IPR036875 GO:0003676|GO:0008270
Viun7g01920 734 MobiDBLite consensus disorder prediction 628 672 - -
Viun7g01920 734 MobiDBLite consensus disorder prediction 611 726 - -
Viun7g01920 734 Pfam Helicase conserved C-terminal domain 328 434 IPR001650 -
Viun7g01920 734 Gene3D - 91 303 IPR027417 -
Viun7g01920 734 SMART helicmild6 354 434 IPR001650 -
Viun7g01920 734 CDD SF2_C_DEAD 326 443 - -
Viun7g01920 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 299 IPR014001 -
Viun7g01920 734 CDD DEADc 101 300 - -
Viun7g01920 734 Gene3D - 687 732 - -
Viun7g01920 734 ProSiteProfiles Zinc finger CCHC-type profile. 714 729 IPR001878 GO:0003676|GO:0008270
Viun7g01920 734 Pfam DEAD/DEAH box helicase 114 288 IPR011545 GO:0003676|GO:0005524
Viun7g01920 734 Gene3D - 317 520 IPR027417 -
Viun7g01920 734 SMART ultradead3 109 317 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01920 Viun-Chr7 24304698 24311919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01920 83 456 Eukaryotic Initiation Factors Gene Family AT1G72730 35.714 7.16e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01920 - - gmx:100815040 1207.2