Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01901 ATGATTCAAAGTGATGAGTTTGCAAAGGCTGCTTCTAGCAGCAAAGGTTCTCAGCATTCCTCAGTCATAAACTCATGTAATTTGACTTCTGATGCATCAAATTTCGTTCCTGATGAGCAATCTCCAGCTGATGAAGCCTTGTTAGAATCTTCTTCCCTATGCTCCCTTGGAGCCTCAAATAACAGAAACATCTGTAGTAGGAAACATGATGACATCGATGACTCGGTTCAGAATAACGAAGAAATAGTAAAGAAAAAGGCTGCTAGGGAAGGCACTGGAGTGAAGAGAAGTAGGAATGCAGAAGTTCATAATTTGTGTGAAAGGAAAAGAAGAGACAAGATCAACAAGAGGATGCGTATATTGAAGGACCTCATACCCAACTGCAACAAGAATGACAAAGCTTCAATGCTTGATGATGCCATTGAATATCTCAAGACCCTCAAGCTTCAGTTACAGATTATGACAATGGGTGGTGGATTTTGCATGCCTTTTATGATGTTACCTAATGCTGCTCATTGCATGATGAACGCACCCCATTTGCAGCATTTGCAGCAGTCAGGCACAACCTTCCCTTGCAATCTGCCTCAGTTCCCTATCACACCTTTGCCTGCAATCACTGACAACAGAGTTCACATGTTTCGTTTCACGCCCATTTCTCATGCACCACCGTTCATTCCAATGGCTCAAAACCCTTCCCAGTTAACTACTCTATTGGCCTCACTCTCCAACAACTCATATCTTAATGGACAAGCTGAACTTGCAATAAAACAACCACTGAAGCAGGTTTTCCCTCACCACTAG 801 0.4257 MIQSDEFAKAASSSKGSQHSSVINSCNLTSDASNFVPDEQSPADEALLESSSLCSLGASNNRNICSRKHDDIDDSVQNNEEIVKKKAAREGTGVKRSRNAEVHNLCERKRRDKINKRMRILKDLIPNCNKNDKASMLDDAIEYLKTLKLQLQIMTMGGGFCMPFMMLPNAAHCMMNAPHLQHLQQSGTTFPCNLPQFPITPLPAITDNRVHMFRFTPISHAPPFIPMAQNPSQLTTLLASLSNNSYLNGQAELAIKQPLKQVFPHH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01901 266 SMART finulus 104 153 IPR011598 GO:0046983
Viun7g01901 266 MobiDBLite consensus disorder prediction 1 22 - -
Viun7g01901 266 PANTHER TRANSCRIPTION FACTOR PIF3 18 236 IPR044273 GO:0003700|GO:0006355
Viun7g01901 266 CDD bHLH_AtPIF_like 98 160 IPR047265 -
Viun7g01901 266 Pfam Helix-loop-helix DNA-binding domain 102 147 IPR011598 GO:0046983
Viun7g01901 266 Gene3D - 94 155 IPR036638 GO:0046983
Viun7g01901 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 157 IPR036638 GO:0046983
Viun7g01901 266 FunFam Basic helix-loop-helix transcription factor 93 156 - -
Viun7g01901 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01901 Viun-Chr7 24154246 24156101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01901 37 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 40.758 1.47e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g01901 HLH 8.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01901 K12126 - vun:114192660 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01901 7 24154246 24156101 Viun7g01901 7 24154246 24156101 ECH
Viun1g02902 1 37915889 37918893 Viun7g01901 7 24154246 24156101 PCT