Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01898 ATGGGCAAAGCTTCTAGTTCTTCCTCCTCTTCAATCACCAGCTGCAGGAACAACCCTTCCAATTCAACTGCATCCTCTCTCACGCACCAACATAGCCAAGACCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCCGCCTCTCAACATGTTGCCTCTTCCAGTTCAGGGGGGCACTGGCAACCGATGCAGCCACATCTAAGTAGTTTTTCACAAGCTACTGAAGTTAATGATTGCAGCGATCACACGAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAATTTGTTAGCTCATGATGGTTATCACGAGTTAGTGAAGACCCTTGAACAAATGTTTGACACCACCATTCTGTGGGGGACTGAGATGGATGGAGTGCAACAAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGAGACGTTCCTTGGGAGATGTTCCTTTCGGCTGTAAAAAGGTTGAAGATCACAAGGGTTGAGACATTTGGGTGA 531 0.4576 MGKASSSSSSSITSCRNNPSNSTASSLTHQHSQDLRTDLRLGLSISASQHVASSSSGGHWQPMQPHLSSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQQERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01898 176 SUPERFAMILY CAD & PB1 domains 80 170 - -
Viun7g01898 176 MobiDBLite consensus disorder prediction 1 31 - -
Viun7g01898 176 Gene3D - 78 175 - -
Viun7g01898 176 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Viun7g01898 176 Pfam AUX/IAA family 73 171 IPR033389 -
Viun7g01898 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 172 IPR003311 GO:0005634|GO:0006355
Viun7g01898 176 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01898 Viun-Chr7 24122067 24123395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01898 88 169 B3 DNA Binding Superfamily AT4G23980 38.554 1.44e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun7g01898 AUX_IAA 7.1e-29 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01898 7 24122067 24123395 Viun7g01898 7 24122067 24123395 ECH
Viun1g02901 1 37903381 37904668 Viun7g01898 7 24122067 24123395 PCT