Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01877 ATGGGTGTGGAGAACGGAGAAGAGATAAAAGATGATGAGGCAAGCACATCAGAGAATGGGAAAAAGGAAGAAGGAAGGAAGAAAGAAAGAGAAAAGACAGAGAGAGTTCCGTTTTATAAGCTGTTCGGTTATGCACACTCCACTGACATTTTCTTTATGGCTGTTGGGAGCATTGCTGCCATTGCAAACGGTGTCGCTTTCCCTCTCTTGGCATTACTAATGGGTCAAATAATTGATACCTTCGGCGCCACTAACCCAAATCTACTCCAAGATGTTTCCAAGGTTTGTCTTAAAATTTTATACTTGGCACTAGGATCTGCAATAGGAGCCTTCCTACAGGAGGCATGTTGGGCGGTGACGGGGGAGAGGCAAACTGCACGAATAAGGGAACTGTATCTGAAAACTATTCTCAGACAAGATATCGCTTTCTTTGATGAGGAAACAAACACCGGAGAGGTGATAGGGAGAATATCAGGTGACACCATTCTTTTACAAGAAGCCATGGGTGAGAAGGTTGGGAGATTTGTGCAGCTTGTAGCAACATTCACCGGTGGATTTGTGATAGCGTTGGTGAAAGGGTGGCTTCTTACTGTTGTCATGCTGTCCTCTCTTCCACTTCTTGTTTTGTCAGGTGCTGCTGTGGCCTTCACCATACAAAGGATTGCTTCCACAACTCAAACAGCTTATGCAAAAGCTGCACGTCTTGTCCAACAGACTATTGGCTCAATAAGAACCGTTGCATCCTTTACTGGGGAAAAACAAGCAGTATCTAGTTATAACAAAGATCTTGCACATGCTTACAAATCAGGAATTCAAGAAGGTTGCATTCATGGAATCGGTGCAGGCACACTTTTGTTTGTTACTTTCGGGACTTATGCTTTGGGAGTATGGTATGGAGCAAAGTTGATAATGGAAAAAGAATATAGTGGGGGCAGGGTGATAAATGTGATTGTTGCCATACTTATCGGTTCATCGTCTCTTGGACAGACATCCCCTTGCATAAATGCTTTTTCTTTAGGTCAGGTTGCAGCATACAAAATGTTCCAGACGATTGAAAGGAAGCCAGAGATAGACGCTTACGATCCAAATGGGAAAATATTACAAGATATTCAAGGCGAAATAGAGTTAAGGGATGTTTATTTCAGTTACCCATCAAGACCAGAAGAACTGATATTTGGTGGATTCTGTCTTCGTATAGCAGGTGGTACAACTGCAGCTTTAGTTGGACAAAGTGGAAGTGGAAAGTCTACAGTTATCAGCTTGGTAGAAAGATTCTACGATCCACAGGCTGGTGAAGTTCTTATTGATGGCATTAACCTCAAAGAATTTCAGCTAAGGTGGATCAGAGGAAAAATAGGCCTTGTCAGCCAGGAGCCTGTGTTGTTTGCATCTACCATTAAGGATAATATCGCATATGGAAAAGAAGGTGCAACAATTGAAGAGATAAGATCTGCCGCTGAACTTGCAAATGCTGCTAAGTTCATTCATAAGCTTCCACAGGGATTGAACACAGTGGTTGGTGATCATGGAAGCAAGCTATCTGGTGGGCAGAAGCAACGCATTGCCATAGCCAGAGCAATTCTGAGAAATCCTCGAATTCTACTTCTGGATGAAGCCACAAGTGCACTTGACGTAGAGTCAGAAAGAATAGTTCAAGAGGCTCTAAATAGGATCATGATCAACAGAACTACTATTGTGGTGGCGCATCGCTTGAGCACAGTGAAGAATGCTGATACGATTGCTGTCATTCACAGAGGGAAAATGATTGAGAAAGGAACACACTCAGAATTATCAAAGGGTGATGGAGCTTACTCTCAACTTATACGCCTACAAGAAATAAGCAATGACTCAGAAGAAAATGCTGATCATCACAGCAAGGGTGAAATTTCAGTAGAATCGTTTAGACAATCTAGTCAAAGGAGATCACTTGAAAGATCTATCAGTAGGGGTTCATCCAAAGGGAATAGTAGCAGACACTCTCCTTCGGTTTCCTTTGGTTTATCCAAAGGAGTCAATGTCTCTGATCCTGAACTTGAAAACTCACAACCCAAAGAACAAGCTCCAGAGGTTCCACTTAGCCGCCTTGCTTCCCTCAATAAGCCAGAGATTCATGTCCTTTTGATTGGATGTGTAGCTGCCATAGCAAATGGTGTTATATATCCAATATATGGGTTGCTGGTTTCCATGGCCATCAAGACATTTTATGAACCATTTGATCAGATGAAAAAAGACTCCAAGTTTTGGGCACTGATGTTTACTGTCGTTGGTATTGCAGCATTTGTGACAAATGTCGGACAACGATACTTTTTTTCTGTGGCGGGATGCAAGTTAATCCAGCGTATCAGGCTAATGTGTTTTGAGAAGGTTGTAAACATGGAGGTTGGTTGGTTTGATGAAGCTGAAAACTCAAGCGGTGCTCTCAGTGCGAGACTCTTAGCAGATGCGGCTTTGGTACGTGCCCTTGTTGGTGACGCGCTGGGACTATTCGTTCAAAATTCGGCATCTGTATTGGCTGGATTCATTATTGCTTTCACTGCATCTTGGCAGACGACGTTAGTTATTCTTGTCCTGATTCCCTTTTTTGGAATCAATATATACCTTAAGAACAAACTCTCGAACGAATTCAGTGCAGATGTAAAGATGATGTATGAGGAAGCGAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACGGTTGCTTCTTTCTGCGCTGAAGACAAGATTATGGAACTATACAGGAAAAAATGTGAGGCCCCCATCAAAGCAGGGATACGAGGAGGATTGATCAACGGAGCAGCGTTTGCGGTTTTGGCTTTCTCGTTGTATGGTTTTCACGCAACCAGTTACTACGCAGGAGCTAGACTCGTGGAAGCTGGGAAGGCGTCATTCTCAGATGTTTTCCGGGTTTTCTTTGCATTAACTATGGGAACTGCTGGTATTTGCCAATCAAGATCCCTTGCTCCTGACTCGAGCAAAGCGAAGTCAGCCACTGCGTCCATATTTAAAATGCTTGATAAGAAGTCGAAAATAGATCCGAGTGATGAGTCTGGCATCACACTGGACAGCGTCAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTCAAGTATCCATCTAGGCCTGAGATACCCATTTTCCAAGACCTCAGCTTGGGTATCCATTCTGGCAAGACGGTGGCTCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTTCCTTGTTGCAAAGATTTTATGATCCTGATTCAGGGCAAATCACACTTGATGGTGTGGAAATTCGTGAGTTGCAACTCAAGTGGTTTAGACAGCAGATGGGCCTTGTAAGCCAAGAGCCAGTTTTGTTCAATGAAACAATACGTGCCAATATTGCCTATGGAAAAGAAGGCAATGCTTCTGAAGCAGAGATCATAGCTGCAGCAGAATTGGCCAATGCACATACATACATTAGTGGCCTACAACAGGGTTATGATACTTTGGTGGGGGAGAGAGGAACCCAATTATCTGGTGGCCAAAAGCAACGGGTAGCCATTGCACGAGCCATAATAAAAAATCCGAAGATATTGCTGCTCGATGAGGCGACGAGTGCATTAGATGCAGAATCAGAAAGAGTTGTTCAAGATGCATTGGACAAAGTGATGGTGAACAGAACCACTGTGGTGGTTGCACATCGTCTATCCACAATAAAAAATGCAGATGTGATTGCTGTTATCAAAAATGGAGTCATAGTGGAGAAAGGAAAACATGAAACACTTATTAACGTCAGTGGTGGATTTTACGCTTCCTTAGTCCAACTTCACACAAGTTCTTCGACACCTTGA 3822 0.432 MGVENGEEIKDDEASTSENGKKEEGRKKEREKTERVPFYKLFGYAHSTDIFFMAVGSIAAIANGVAFPLLALLMGQIIDTFGATNPNLLQDVSKVCLKILYLALGSAIGAFLQEACWAVTGERQTARIRELYLKTILRQDIAFFDEETNTGEVIGRISGDTILLQEAMGEKVGRFVQLVATFTGGFVIALVKGWLLTVVMLSSLPLLVLSGAAVAFTIQRIASTTQTAYAKAARLVQQTIGSIRTVASFTGEKQAVSSYNKDLAHAYKSGIQEGCIHGIGAGTLLFVTFGTYALGVWYGAKLIMEKEYSGGRVINVIVAILIGSSSLGQTSPCINAFSLGQVAAYKMFQTIERKPEIDAYDPNGKILQDIQGEIELRDVYFSYPSRPEELIFGGFCLRIAGGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASTIKDNIAYGKEGATIEEIRSAAELANAAKFIHKLPQGLNTVVGDHGSKLSGGQKQRIAIARAILRNPRILLLDEATSALDVESERIVQEALNRIMINRTTIVVAHRLSTVKNADTIAVIHRGKMIEKGTHSELSKGDGAYSQLIRLQEISNDSEENADHHSKGEISVESFRQSSQRRSLERSISRGSSKGNSSRHSPSVSFGLSKGVNVSDPELENSQPKEQAPEVPLSRLASLNKPEIHVLLIGCVAAIANGVIYPIYGLLVSMAIKTFYEPFDQMKKDSKFWALMFTVVGIAAFVTNVGQRYFFSVAGCKLIQRIRLMCFEKVVNMEVGWFDEAENSSGALSARLLADAALVRALVGDALGLFVQNSASVLAGFIIAFTASWQTTLVILVLIPFFGINIYLKNKLSNEFSADVKMMYEEASQVANDAVGSIRTVASFCAEDKIMELYRKKCEAPIKAGIRGGLINGAAFAVLAFSLYGFHATSYYAGARLVEAGKASFSDVFRVFFALTMGTAGICQSRSLAPDSSKAKSATASIFKMLDKKSKIDPSDESGITLDSVKGEIELRHVSFKYPSRPEIPIFQDLSLGIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGVEIRELQLKWFRQQMGLVSQEPVLFNETIRANIAYGKEGNASEAEIIAAAELANAHTYISGLQQGYDTLVGERGTQLSGGQKQRVAIARAIIKNPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVIKNGVIVEKGKHETLINVSGGFYASLVQLHTSSSTP 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01877 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 993 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun7g01877 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1265 IPR003439 GO:0005524
Viun7g01877 1273 Pfam ABC transporter 1047 1196 IPR003439 GO:0005524
Viun7g01877 1273 MobiDBLite consensus disorder prediction 1 29 - -
Viun7g01877 1273 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524|GO:0016887
Viun7g01877 1273 Gene3D - 372 628 IPR027417 -
Viun7g01877 1273 MobiDBLite consensus disorder prediction 631 667 - -
Viun7g01877 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 1011 - -
Viun7g01877 1273 ProSitePatterns ABC transporters family signature. 1168 1182 IPR017871 GO:0005524|GO:0016887
Viun7g01877 1273 FunFam ABC transporter B family member 9 40 370 - -
Viun7g01877 1273 FunFam ABC transporter B family member 1 1018 1268 - -
Viun7g01877 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1265 IPR027417 -
Viun7g01877 1273 Pfam ABC transporter 397 541 IPR003439 GO:0005524
Viun7g01877 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 53 347 - -
Viun7g01877 1273 SUPERFAMILY ABC transporter transmembrane region 694 1012 IPR036640 GO:0005524|GO:0016020
Viun7g01877 1273 MobiDBLite consensus disorder prediction 615 667 - -
Viun7g01877 1273 PANTHER ABC TRANSPORTER B FAMILY 13 613 IPR039421 -
Viun7g01877 1273 FunFam ABC transporter B family member 9 995 1017 - -
Viun7g01877 1273 Gene3D ABC transporter type 1, transmembrane domain 3 88 IPR036640 GO:0005524|GO:0016020
Viun7g01877 1273 FunFam ABC transporter B family member 1 686 994 - -
Viun7g01877 1273 FunFam ABC transporter B family member 1 364 612 - -
Viun7g01877 1273 Pfam ABC transporter transmembrane region 56 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun7g01877 1273 Pfam ABC transporter transmembrane region 706 977 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun7g01877 1273 CDD ABC_MTABC3_MDL1_MDL2 374 611 - -
Viun7g01877 1273 SUPERFAMILY ABC transporter transmembrane region 40 358 IPR036640 GO:0005524|GO:0016020
Viun7g01877 1273 Gene3D - 1018 1272 IPR027417 -
Viun7g01877 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun7g01877 1273 MobiDBLite consensus disorder prediction 615 630 - -
Viun7g01877 1273 CDD ABC_MTABC3_MDL1_MDL2 1028 1266 - -
Viun7g01877 1273 Gene3D ABC transporter type 1, transmembrane domain 97 1002 IPR036640 GO:0005524|GO:0016020
Viun7g01877 1273 SMART AAA_5 401 593 IPR003593 GO:0016887
Viun7g01877 1273 SMART AAA_5 1055 1249 IPR003593 GO:0016887
Viun7g01877 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 611 IPR027417 -
Viun7g01877 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 610 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01877 Viun-Chr7 23939248 23950742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01877 23 1272 Calmodulin-binding Proteins AT2G36910 43.592 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01877 K05658 - gmx:100777909 1865.89