Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01875 ATGTCCGGTAAAGTACTCGGTCCCGCAATTTCGCTCGTCCTTGTGGTGGGTGTTGTCATTGGCGTGGTTGCCGTAGTTCAGAGCCCGAAGCCAGACGCGAACAGCACAGGAGAACTGAAAACCACGACCAGAGCTGTGACAGCGTTGTGCCAAGACTCAGACGACCCAAAACTGTGCCACAATGTGCTTTCCTCTGCAAACAGCTCAGACCCTAAGGATTACATTGTCACCGTGGTGAAAACCTCGATGGACAGTGTCATAAAAGCCTTCAACATGAGCGACAAGCTCACGGTGGAGCACGGCAATACCAGCCAGGGAATGAAGATGGCCCTCGACGATTGCAAGGATTTGTTGCAAAGCGCGATGCACGAACTCGAAGCCTCAGGCGTGTTGATCAAAGAGAGCAACATCTCGGACGTTACCGACCGCAGTGCCGAACTCAAGAACTGGTTAGGTGCTGTGGTGGCCTACCAGCAATCTTGCCTCGACGGCTTCGACACCGACGGCGAGAAGAAGGTTCAGGAACAGTTGGAGGCCGGTAGCTTGGACAACGTTGGAAAGCTCACTGGATTGGCACTTGATGTCGTGTCAGGGATTGCAAAGGTTCTTCAATCCATGGACTTGAACTTGGCCTTGAAACCAGCCTCTCGTCGCCTTCTTGATGTTGATCAAGAAGGGTACCCCACTTGGCTCACCGCTGCTGATCGCAAGCTCATGGCTGGAGAACCAGTTATCCCCCATGCTACAGTGGCTCAGGATGGCAGCGGCCAATTCAACACCGTTCTTGATGCCATCAACTCCTACCCCAAGAATCACCAAGGAAGATTCATCATCTACGTCAAGGCTGGCGTCTATAACGAGTACATCCTTGTTGACAAGAAGAAGTTGAACCTTCTCATCTACGGCGATGGCCCCACCAAGACCATCATCACCGGACGCTTAAACTACGCCGAGGGTACCAAGACAATGAGAACCGCCACCTTCTCCACTGTTGCTGAGGATTTCATGGCAAAGTCCATTGCATTCGAGAACACCGCTGGAGCAGCCGGACATCAAGCAGTGGCTCTCCGTGTACAGGGTGATCGCTCAGTCTTCTTCGATTGCGCAATGCGCGGTTACCAAGACACTTTGTACGCACACGCCCACCGTCAGTTTTACCGCAACTGTGAAATCTCTGGAACAATCGACTTCATCTTCGGGTACGCCACCGCCTTGATCCAGAACTCGAAGATCCTGGTGAGGAAGCCCGACGCAAACCAACAGAACATAGTGGTGGCTGATGGAACACAACAGAAAAACATGCCCACTGGAGTTGTCCTCCAGAACTGCGAGATCACCGCCGACCCTACACTCTTCCCTGAGCGGATGGTAGTGAAGACATACCTTGCAAGGCCATGGAAGGCATTCTCCAGGGCAGTGTTCATTGAGAACGTGATCGGTGACTTGATCCAGCCAGAGGCCTACATTCCATGGAACCCTGCAACTGAGCCCAACACCCAAGACTGCTACTTCGCTGAATTTGGGAACACTGGACCTGGTTCCGTTGCTAACGCAAGGGCACCCTTCAGCAAAGGTCTCATCAGCAGGGAGGAGGCCGCACAATTCACCGCTGAGCCCTGGCTCCAAGCTAGCACCTGGTTGCCTGCCACCGGCATTCCTTATGACGCCAGCTTCACCAAAGCTTAA 1686 0.5326 MSGKVLGPAISLVLVVGVVIGVVAVVQSPKPDANSTGELKTTTRAVTALCQDSDDPKLCHNVLSSANSSDPKDYIVTVVKTSMDSVIKAFNMSDKLTVEHGNTSQGMKMALDDCKDLLQSAMHELEASGVLIKESNISDVTDRSAELKNWLGAVVAYQQSCLDGFDTDGEKKVQEQLEAGSLDNVGKLTGLALDVVSGIAKVLQSMDLNLALKPASRRLLDVDQEGYPTWLTAADRKLMAGEPVIPHATVAQDGSGQFNTVLDAINSYPKNHQGRFIIYVKAGVYNEYILVDKKKLNLLIYGDGPTKTIITGRLNYAEGTKTMRTATFSTVAEDFMAKSIAFENTAGAAGHQAVALRVQGDRSVFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYATALIQNSKILVRKPDANQQNIVVADGTQQKNMPTGVVLQNCEITADPTLFPERMVVKTYLARPWKAFSRAVFIENVIGDLIQPEAYIPWNPATEPNTQDCYFAEFGNTGPGSVANARAPFSKGLISREEAAQFTAEPWLQASTWLPATGIPYDASFTKA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01875 561 FunFam Pectinesterase 4 244 558 - -
Viun7g01875 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 200 IPR035513 -
Viun7g01875 561 CDD PMEI-like_3 48 201 - -
Viun7g01875 561 PANTHER PECTINESTERASE 19 548 - -
Viun7g01875 561 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Viun7g01875 561 SUPERFAMILY Pectin lyase-like 247 555 IPR011050 -
Viun7g01875 561 Pfam Pectinesterase 248 543 IPR000070 GO:0030599|GO:0042545
Viun7g01875 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 197 IPR035513 -
Viun7g01875 561 FunFam Pectinesterase 42 200 - -
Viun7g01875 561 NCBIfam pectinesterase inhibitor domain 25 175 IPR006501 GO:0004857
Viun7g01875 561 SMART PMEI_2 41 195 IPR006501 GO:0004857
Viun7g01875 561 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Viun7g01875 561 Gene3D - 244 560 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01875 Viun-Chr7 23887727 23889860 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01875 1 553 Carbohydrate Esterase AT2G47030 39.698 1.17e-131 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01875 K01051 - gmx:100808559 939.873