Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01873 ATGGAAAAGAACGCGACAATGGTCTCTGCTGTTTCTCTGATTCTCGTAGTAGGCGTTGCCCTAGGCGTTGTCGCTTTTGTCTCCACCGGGGACGAGGAACCCATCGCCGCCGCAGGCGACAGCACCGGAAAGTTGACCACCCACGCGAAAGCCGTGCAAGCCGTGTGTCAAAACAGCGACGACAAGGAGTTCTGCTCCGACACTTTCAGCTCCGTCAACACCTCAGACCCAACCGCATACGTAAAAACCGTGGTGAAAAAAGCGACGCAGGACGTCATCAAAGCCTTCAACCTAAGCGACACTCTCACCGTCGAAAACACCAAGGGAAACTCTAGCATCAAGATGGCCCTTGATGATTGCAAGGACCTGTTGGAATTCGCCATCGATGAATTAGAAGCCTCCCAGCTTATAGTCCAAGAGAACAACATTAATAACATCAACGCCCGCGCCGCCGACCTCAAAAACTGGATTGGCGCCGTCGTGGCGTACAAGGAATCGTGCCTGGACGGCTTCGACACCGACGGAGAGAAGGAGGTGCAATCCAAGTTGAAAACCGAAAGTTTGGACAGTGTTGGGAAGTTAACGGCGTTAGCGCTTGACGTTGTATCCGGCTTCGCGGAAATACTCTCTGACTTCAATTTGGATCTGATTACCAAGACTTCGTCTCGTCGTCTTCTCGATGTGGACCAAGAAGGATATCCATCGTGGTTGTCCATGCCGGATCGGAAGCTCTTGGCGGATACAGCTTCCGTTAAACCTAATGTGGTCGTTGCCAAGGATGGTAGTGGCGATTATAAGAGCGTTGAGGAGGCTATTAACTCCTACCCCAAGAATCATCAAGGCAGATACATTATCTACGTCAAGGCTGGTACCTACGATGAATACATCAAAGTCGACAAAAAGAAGGCTAGACTTCTAATCTACGGCGATGGCCCCACAAAGTCAATTATCACCGGCAATAAAAACGTCGTCGATGGTTATAAGACAATTAGAACCGCTACCTTCTCGACGGTGGCAGAAGATTTCATTGCAAAATCTATCGCATTTGTGAACACCGCCGGCGCGGCCAAACACCAAGCAGTGGCGCTGCGCGTGCAAGGCGATCGGTCGGCCTTCTTCGACTGCGCCATGCACGGTTACCAGGACACGCTGTACACCCACGCTCATCGTCAGTTCTACCGCAACTGCGAAATCTCCGGCACGGTGGACTTCATTTTCGGCTACGGCACAACCCTGATCCAGAACTCGAGGATCATTGTGCGGAAGCCAGATCCGAATCAGCAGAACATTGTGGTGGCGGACGGGACGGACCAAAAGAACATGCCGACGGGAGCGGTGCTACAAAACTGCGAGATCGTGGCGGAGCCGGAACTGGAGCAGGTAAAGACGTCGTTCAAGTCATACTTGGCGAGGCCGTGGAAGGCATATTCGAGGGCCATCTTCCTAGAAAACACGATCACCGATGTGATTCAGGCTGATGGGTTTCTTCCCTGGAATGGTGACCTGAACCTGGACACGTGTTTCTTTGCTGAGTATGAGAACACTGGCCCGGGTGCCGATGTGAAAGCTAGGGTGAAGTGGAGTAAAGGGGTCCTTACCAAGGATGATGCTACCAAATACACTGCTGACCAATGGCTCCAGGCCAACGCCTGGCTCCCTGCCACCGGCATTCCTTACACTCCTGGCTTCAACAAAGCTTGA 1701 0.5232 MEKNATMVSAVSLILVVGVALGVVAFVSTGDEEPIAAAGDSTGKLTTHAKAVQAVCQNSDDKEFCSDTFSSVNTSDPTAYVKTVVKKATQDVIKAFNLSDTLTVENTKGNSSIKMALDDCKDLLEFAIDELEASQLIVQENNINNINARAADLKNWIGAVVAYKESCLDGFDTDGEKEVQSKLKTESLDSVGKLTALALDVVSGFAEILSDFNLDLITKTSSRRLLDVDQEGYPSWLSMPDRKLLADTASVKPNVVVAKDGSGDYKSVEEAINSYPKNHQGRYIIYVKAGTYDEYIKVDKKKARLLIYGDGPTKSIITGNKNVVDGYKTIRTATFSTVAEDFIAKSIAFVNTAGAAKHQAVALRVQGDRSAFFDCAMHGYQDTLYTHAHRQFYRNCEISGTVDFIFGYGTTLIQNSRIIVRKPDPNQQNIVVADGTDQKNMPTGAVLQNCEIVAEPELEQVKTSFKSYLARPWKAYSRAIFLENTITDVIQADGFLPWNGDLNLDTCFFAEYENTGPGADVKARVKWSKGVLTKDDATKYTADQWLQANAWLPATGIPYTPGFNKA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01873 566 Gene3D - 248 563 IPR012334 -
Viun7g01873 566 Pfam Plant invertase/pectin methylesterase inhibitor 51 199 IPR006501 GO:0004857
Viun7g01873 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 205 IPR035513 -
Viun7g01873 566 NCBIfam pectinesterase inhibitor domain 45 188 IPR006501 GO:0004857
Viun7g01873 566 SUPERFAMILY Pectin lyase-like 251 562 IPR011050 -
Viun7g01873 566 Pfam Pectinesterase 254 548 IPR000070 GO:0030599|GO:0042545
Viun7g01873 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 202 IPR035513 -
Viun7g01873 566 FunFam Pectinesterase 248 563 - -
Viun7g01873 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Viun7g01873 566 CDD PMEI-like_3 54 206 - -
Viun7g01873 566 PANTHER PECTINESTERASE 19 553 - -
Viun7g01873 566 SMART PMEI_2 47 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01873 Viun-Chr7 23870169 23872426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01873 2 563 Carbohydrate Esterase AT3G05610 40.702 7.63e-149 442