Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01872 ATGGCGAATGGAAAAGTGCTCGTGTCTGGTGTTTCCTTGATTCTGGTGGTGGGTGTTGCCATCGGTGTTGTGGTGGTGGTTAACAAAAGTGACTCATCAGATCCTAAAATAGCTGCTCAACAAAAGAATGTGAAGGCAATGTGCGAAGGCACCGAAGAGACTAAGCTGTGTCACGAAACTCTGAGCTCTGTGGACGGTAACACCTCAGACCCAAAGGTTTACATAGCAGCAGGAGTGGAAGCAACGATGAAAAGAGTGATCAAAGCTTTGAACATGAGTGATAGGTTGAAAGTGGAGCATGGCGACAAGGATCCCGGCATAAAAATGGCCCTGGATGATTGCAAAGACCTGATCGAATTCGCGTTGGATTCAATCGAGTCGTCGGTTAACCTGGTTCGCGACCAGAACATTCAAGCCATGTACGACCAAACCCCAGACTTCAGGAACTGGTTGAGTGCTATAATCTCGTACCAGGAGACATGCATGGACGGGTTGAACAACGGCACAAACGGTGAGAAAGAAATTAAAGAAAAATTGAACACAGATAGTTTGGACGAAATGGGGAAGCTGACGGGCATAGTCCTTGACATTGTGACAAACTTGTCGAATATTCTTGAGAGGTTCGACTTGAAGTTGAATTTGAGCCCTGCTTCTCGGCGTCTTCTACAGGTGGACCATGAAGGGTTACCTACGTGGTTCTCTGGTGCAGATCGGAAGCTCCTTGCTGCCTTGGATAAAGGGCAAGCAGGGGCACCAAACGCAGTGGTTGCCAAGGATGGCAGTGGTAAATTCAAAACCGTTAAGGAAGCCATTGATTCCTACCCTAAAGGCCACCAAGGTAGATTTGTTATTTACGTTAAGGCTGGCATCTACGACGAGTACATCCTCATTCCTAAGAAGTCAACCAATATCCTCATTTATGGTGATGGCCCTGCAAAGACCATCATCACTGGTCACAAGAACTTTGTAGATGGCGTAAAGACAATGCAAACTGCTACCTTCGCCAACACTGCACCAGGATTCATCGCGAAGTCAATGACATTCGAGAATACCGCGGGAGCCGCGAAGCACCAGGCGGTGGCATTCAGAAACCAGGGAGACATGTCAGCAATGTTCGACTGCTCATTTCACGGTTACCAAGACACACTGTATGTTCACGCGAACCGTCAATTCTACCGGAACTGCGAAATCTCTGGAACAATCGACTTCATCTTTGGAGCATCTGCCACTGTGATCCAGAACTCGAGAATCGTCGCGAGGTTGCCACTATCTAACCAGTTCAACACAGTGACCGCGGACGGAACGAAGCTGAAGAACATGGCGACAGGGATCGTGATCCAGAACTGCGAGATAGTGCCGGAGAAGGCTCTGTACCCTTCGAGGTTGACCGTTAAATCGTACCTGGGGAGGCCGTGGAAGCAATTTGCAAGAACTATTGTGATGGAATCCAACATAGGTGACGTCATTCATCCCGACGGGTGGACCCCTTGGGATGGGAACCTGTTTCTGGATACCTTGTACTATGCTGAGTATGCTAACAGCGGACCTGGTTCCAACCTTCAAGGAAGGATAAAGTGGAAGGGTTACCAAGGAGGTATTAATAAGAACGTAGCCCAACAATTCACTGTTGCCCAATTCCTTAGAGGTGGAACTACGGGTGCTGATGATTGGTTGAAGGCTACTGGTGTTCCTTACGCCGCTGGATTCCTCAAATCTTGA 1719 0.4834 MANGKVLVSGVSLILVVGVAIGVVVVVNKSDSSDPKIAAQQKNVKAMCEGTEETKLCHETLSSVDGNTSDPKVYIAAGVEATMKRVIKALNMSDRLKVEHGDKDPGIKMALDDCKDLIEFALDSIESSVNLVRDQNIQAMYDQTPDFRNWLSAIISYQETCMDGLNNGTNGEKEIKEKLNTDSLDEMGKLTGIVLDIVTNLSNILERFDLKLNLSPASRRLLQVDHEGLPTWFSGADRKLLAALDKGQAGAPNAVVAKDGSGKFKTVKEAIDSYPKGHQGRFVIYVKAGIYDEYILIPKKSTNILIYGDGPAKTIITGHKNFVDGVKTMQTATFANTAPGFIAKSMTFENTAGAAKHQAVAFRNQGDMSAMFDCSFHGYQDTLYVHANRQFYRNCEISGTIDFIFGASATVIQNSRIVARLPLSNQFNTVTADGTKLKNMATGIVIQNCEIVPEKALYPSRLTVKSYLGRPWKQFARTIVMESNIGDVIHPDGWTPWDGNLFLDTLYYAEYANSGPGSNLQGRIKWKGYQGGINKNVAQQFTVAQFLRGGTTGADDWLKATGVPYAAGFLKS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01872 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 203 IPR035513 -
Viun7g01872 572 SUPERFAMILY Pectin lyase-like 248 567 IPR011050 -
Viun7g01872 572 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Viun7g01872 572 PANTHER PECTINESTERASE 19 559 - -
Viun7g01872 572 CDD PMEI-like_3 46 203 - -
Viun7g01872 572 FunFam Pectinesterase 248 569 - -
Viun7g01872 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Viun7g01872 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 202 IPR035513 -
Viun7g01872 572 Gene3D - 248 569 IPR012334 -
Viun7g01872 572 Pfam Plant invertase/pectin methylesterase inhibitor 43 197 IPR006501 GO:0004857
Viun7g01872 572 SMART PMEI_2 39 197 IPR006501 GO:0004857
Viun7g01872 572 FunFam Pectinesterase 40 202 - -
Viun7g01872 572 NCBIfam pectinesterase inhibitor domain 19 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01872 Viun-Chr7 23863756 23865983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01872 6 570 Carbohydrate Esterase AT3G05610 41.754 7.50e-144 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01872 K01051 - gmx:100789650 914.835