Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01849 ATGGATGCTAACTGTGGGCCCCTCGTAGAGTCACAGGCCCAGATGCAGCATAGTGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGGTTGACGAAGACACCATTCTGGTCAATTACATCACCACCCATGGCGAAGGTCACTGGAATTCCGTGGCACGATGTGCAGGTTTAAGGAGGAGTGGGAAGAGCTGCAGACTAAGGTGGCTAAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAAATACTGATCCTCGACCTTCACTCTCGGTGGGGCAACAGGTGGTCGAAGATTGCGCAGCACCTGCCAGGAAGAACGGACAATGAAATAAAGAACTATTGGAGAACGAGAGTGATAAAACAGGCGAAGCAACTCAGGTGCGATGTCAACAGCAAAGAGTTCAGAGACACGTTGCGTTATTTGTGGATGCCGCGCTTACTGGAGCGGCTTCAGCCCACATCGCAAATTCTCGAGCCTCAGATGAAGCTGGACCCAGGCCCAAGTGAAATTCAGGGCTTTCGCGGTTTAGATTCGGTGACGGAGTGGAGTAAAGGGAGCCACCCCGCCGGTTCTTACTCGGACTCATCGTCCGTGGAGCTCCAAGTTCATTCGAATTCAGACCATAGCGATTGTTCGGGTTCGGGTATGGATCCGTGGGGAAGTTTGAATATGCATATGTGGGAACAAGGGAATGGTGGGGGTGAATCGTTGGAAAGTTTTTGGAATGACCTCGAAATAAAATACAGTTCCCTTCCGTGA 780 0.5115 MDANCGPLVESQAQMQHSENEMLGLRKGPWTVDEDTILVNYITTHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSKEFRDTLRYLWMPRLLERLQPTSQILEPQMKLDPGPSEIQGFRGLDSVTEWSKGSHPAGSYSDSSSVELQVHSNSDHSDCSGSGMDPWGSLNMHMWEQGNGGGESLESFWNDLEIKYSSLP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01849 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun7g01849 259 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Viun7g01849 259 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Viun7g01849 259 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Viun7g01849 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Viun7g01849 259 FunFam MYB transcription factor 84 147 - -
Viun7g01849 259 SMART sant 26 76 IPR001005 -
Viun7g01849 259 SMART sant 79 127 IPR001005 -
Viun7g01849 259 CDD SANT 84 123 IPR001005 -
Viun7g01849 259 Gene3D - 27 79 - -
Viun7g01849 259 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Viun7g01849 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Viun7g01849 259 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Viun7g01849 259 FunFam Myb transcription factor 27 79 - -
Viun7g01849 259 CDD SANT 29 74 IPR001005 -
Viun7g01849 259 Gene3D - 84 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01849 Viun-Chr7 23616581 23617887 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01849 3 163 MYB Transcription Factor Family AT1G48000 66.049 4.59e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun7g01849 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01849 K09422 - gmx:778065 315.464