Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01847 ATGGAGACTATCAGTGTTGGGGCAATGAGAAGCTTATCAGATAGTGAAGGAGAATCGGCAATTAAGAAAGGATCATGGACTGAGGAAGAAGATTGTCTTCTCATCAACTATGTCAACCTCCACGGCGAGGGCCATTGGAATTCCCTCGCTCGCTCTGCAGGTCTAAAGCGAACGGGAAAAAGCTGCAGGCTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGCTGGGGCAACCGGTGGGCTAAAATAGCAGAACAATTGCCTGGGCGAACAGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGGTGAAGCAAGCGAAGCAACTCAAATGTGATGTGAACAGCAAACAGTTTAGGGATGCTGTGCGTTTTGTTTGGATGCCACGCCTTATGGAGCGGATTCAAGCTTCTTCTTCCTATGGACATGGCCAAACCACATTGTGCAACACTCAAACACACGCTGAATCTAGTGGGGTCAATCCCATGATGTTTTGTGAAAGCTCAGTGATTTCCTCGTACTCTTCAGGGGTTGATGTTCAGCCTCTTTCTCTCTCTGATGCGAGTACAACTTCATCTTGCAATTTAATGGGAGATGGTAGCTGTTCATCGGACAGTGTTGAAAAGGGGTGGCAGCAGTGGGACTACTCTGATCTCCAGGCATTTGAACCCAACCATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAACATGTGGTTTTTGCAGCAGCATCTTGTTGATGAGTTTTGA 807 0.4672 METISVGAMRSLSDSEGESAIKKGSWTEEEDCLLINYVNLHGEGHWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDAVRFVWMPRLMERIQASSSYGHGQTTLCNTQTHAESSGVNPMMFCESSVISSYSSGVDVQPLSLSDASTTSSCNLMGDGSCSSDSVEKGWQQWDYSDLQAFEPNHGFGDADLWTDENMWFLQQHLVDEF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01847 268 SMART sant 22 72 IPR001005 -
Viun7g01847 268 SMART sant 75 123 IPR001005 -
Viun7g01847 268 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Viun7g01847 268 FunFam Myb transcription factor 23 75 - -
Viun7g01847 268 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Viun7g01847 268 Gene3D - 80 121 - -
Viun7g01847 268 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 194 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun7g01847 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Viun7g01847 268 FunFam MYB transcription factor 80 143 - -
Viun7g01847 268 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Viun7g01847 268 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Viun7g01847 268 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Viun7g01847 268 Gene3D - 16 75 - -
Viun7g01847 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Viun7g01847 268 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01847 Viun-Chr7 23581960 23583359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01847 16 264 MYB Transcription Factor Family AT2G47190 50.388 9.47e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun7g01847 Myb_DNA-binding 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01847 K09422 - gmx:778040 411.379