Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01846 ATGGTCTCACGAGGTTTAACTTATAATATTCTGTCTGGTCTTGAAATTTCGGTAACACTAGTTAGCATTTGCAGTGCCATGGTTTCCAAAACCCACTCCCAACTCATTTTTCTATTTCTGTTTCTTCTTTCATCATTAAACATTGCTTCAAGCTCGTACACACATAATGTGGCCAATTTTGACAAGTGGATATCTTTCAATGTGAAGAAGCATGAAGAGAGAAAGAATGATCCTGGTCCAGATTTGAAGCTGAGGCAAGCTGAGAGTAACAAAGTTACCATAACAGTTAGCCAAGACGGTTCCGGTCACTTCAAGACCATTTCAGAAGCTCTCAATAGCATTCCACCACGCAACACAAGGAGAGTTATAGTGTCGATTTCGCCGGGCGTTTATAGGGAGAAGGTGATGATCCCAAGAACAATGGCTTTCGTTACATTGTCAGGGAACGCCGGAAATCCTCTGACCATTACCGGAAACGATACAGCATCTGCCTCCGGAAGAAATGGCAGTCCCTTGGGGACGTTCCAGAGTGCAACTGTTGCTGTGGATGGTAGCTACTTTGTGGCCATCAACATCAAATTTGAGAACAGTGCTCCTCATGAGATTGGAAGAAGAGGAGAACAAGGCGTGGCGCTTCGGATTTCAGGAACCAAAGCTGCTTTTTACAATTGCAGTTTCAGTGGAGCTCAAGACACTCTCTACGATCATAAAGGCCTTCATTTCTTCAACAACTGCTATATTCAAGGTTCTGTGGATTTCATCTTCGGCTCTGCCAGGTCCCTTTACCAGAATTGCTACCTAAATTCCACGACTAAGAAGGTGGCTTCTATCACTGCTCAAAAGCGTACAAATTCGTCACTGGAGGGTGGATTCTCCTTCAAAAACTGCACAGTAACCGGTAGTGGGCATGTTTATCTAGGAAGAGCATGGGGCGATTATTCCAGAGTTGTTTTCTCTTACACCTACATGGACAACCTAGTACTCCCCAAAGGATGGAGTGATTGGGGTCACCAAAACCGTGATTCGAGGGTATATTATGGAGAATACATGTGTAGTGGGCCAGGAGCTAACTTTGCTGGAAGAGTGCCATGGGCACGAGTGCTTAATGATGAAGAGGCCAAGCCATTTATTGGGACCCAATTCATTGAAGGGGACACTTGGCTCATCGACACGTGGTGA 1179 0.4495 MVSRGLTYNILSGLEISVTLVSICSAMVSKTHSQLIFLFLFLLSSLNIASSSYTHNVANFDKWISFNVKKHEERKNDPGPDLKLRQAESNKVTITVSQDGSGHFKTISEALNSIPPRNTRRVIVSISPGVYREKVMIPRTMAFVTLSGNAGNPLTITGNDTASASGRNGSPLGTFQSATVAVDGSYFVAINIKFENSAPHEIGRRGEQGVALRISGTKAAFYNCSFSGAQDTLYDHKGLHFFNNCYIQGSVDFIFGSARSLYQNCYLNSTTKKVASITAQKRTNSSLEGGFSFKNCTVTGSGHVYLGRAWGDYSRVVFSYTYMDNLVLPKGWSDWGHQNRDSRVYYGEYMCSGPGANFAGRVPWARVLNDEEAKPFIGTQFIEGDTWLIDTW 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01846 392 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Viun7g01846 392 Gene3D - 87 391 IPR012334 -
Viun7g01846 392 SUPERFAMILY Pectin lyase-like 91 388 IPR011050 -
Viun7g01846 392 FunFam Pectinesterase 89 390 - -
Viun7g01846 392 Pfam Pectinesterase 94 385 IPR000070 GO:0030599|GO:0042545
Viun7g01846 392 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 83 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01846 Viun-Chr7 23568239 23575538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01846 70 388 Carbohydrate Esterase AT5G47500 44.548 3.54e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01846 K01051 - pop:7455411 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01846 7 23568239 23575538 Viun7g01846 7 23568239 23575538 ECH