LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g01799	ATGGAAAAACATGTGAAATTGTTGAACTCAAAAAACAGTGTCTGGCAATTGCAATCAGAAATTGAAGAGTTAGGTGAAGTGTTACGGCCAATGAAATCTTCGTCAACCAACATGGCAAGATTTTTTAGCTCAAACCTTGATGATACTACTAATGTATCATTCTCTGATATTAAGAACAAGGTGGCTCCGTTTTTGTTTGCAGCATTTGAGACTGTTCCATACTTAGCCCAAATCTCATACATAGGTGTAGAAGGTTTATTTTTCTCCTACTACACTCATAATCATCAACTTCTAGCTATGTACTCCAACTCATCATCAATTTCAGTTGCCTCCAACAAAATCTTCATTCAACCTGTGAATCCTGAAACTGGAGAGCTTCATGGTGAACCCACAATCATGCTATCTAACCCCTTTATCAATGCAACTTGGATTGGAGAAGCACTTAATGTCTCAACTGGGTTTTACTCATTTGGACCCAACTGGGCCAATTCTGAATCTTTGTTCCTCACTTCAGCCAGAATCATGAGAAGAGGACTCATCTCTCTTGGCTTCTCTGCAACGCCAATAACTCATTCTGTTACTCGCATTGACCAACAACATGGCACAACCTCCTATTTAGCTACCAAAGATGGAAAAGTTGTTGTGCCAGGGATTCAACTTACCCATTTCCTCATTTCTAATGATACAGTTTCGTTTCAATCACTGAATGCAAATGGTGATCCCACAGTTAATAGGGGCACTGTCTCATGCAAGGATGAAGCTGCTGCTTCTAGTTTCAACATTAGAGATATTGCATATGCAATTCACTGCTACACCATCGATATAATGGGAATAGAATCGGTGTATGTGTTGGGTGTCCCAGAAGAAGGATATGCGAGCATTGATCGGAATTACAAGGAAAAGGGATTGATGGTGTTTGTGGCAACAATGGTCACTATATTTATTGCTTTCTTCAGTTTTCTATTCGTAAACTGCAGAGCCTTTAGGCGAGAAATGCATTTGTGTGCCTCACTCATCAAACAGTGTGAAGCCACCCAACAAGCCGAGAAAAAGAATATGAACAAGAGCACCGCTTTTGCGAGTGCCAGCCATGATGTTCGTGCTTCTCTCGCAGGCATCACCGGTTTGATAGAGATATCTGCAGAGTTGGTTGCCCCCGGTTCAGAATTGGAGACCAATCTCAAACAAATGAATGGTTGTACCCAAGACTTACTAGGACTGTTGAATTCTATACTAGACACAAGCAAAATAGAGGCAGGAAAAATGCAACTTGAAGAAGAGGAGTTTGATCTGTTTCATCTCTTGGAAGATGTAGTTGACTTTTACCATCCTGTGGCTGCGAAGAAAGGTGTAGATCTGGTGTTGGACCCTTGTAACGGTTCTGTAGTGGGATATTCACGCGTGAAAGGTGATAGGGGCAAACTGAAACAAGTTCTGTGTAATTTATTGAGCAATGCTGTCAAATTTACTGATGAGGGACACATAGCGGTACGCGCATGGACTCGGAAGCCAAAACTACTGCAGAACTCAACAGTCACTTTTAACCAATTTGGTTTCAAGCAATATTTATCATGCTTATTTGGTAACAAAACTGAAGCACGTAGTGACGTGGAATCCACGCGTTCAATCCAAGAAGATCCTCATTCTATGGATTTTATATTTGAAGTGGATGACACAGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTTTTCGAGAATTACGTCCAAATAAAAGATACTGCTCTTGGCCAAGGGGGAACTGGCTTGGGACTTGGGATTGTGCAGTCGCTGGTGCGTTTGATGCATGGAGATATTGAGATTGTGGAGAAGGATACTGGTGAAAGAGGGACATGCTTCAAGTTCAATGTGCTTCTCACTGTATGTGAGAATGAGGCAGTGTCAGATGGTAGCAGAAGGGAGGGTATTGGTTGTGGATCAGGAGATAGAATAATACAAGTTCAGGAGCAAACTATGAACGCTTCATGTTCTGGTTCTTCTAGAATTTGTTCCATGAGTCCTAAGTTACGAATCTGCAGCTCTAGTCCTAAGCCCGAGGCTTCCCTTGTGGTTCTTTTGATTGTTGACGAAGAGCGCCAAAGGACTTCACAAATGTTCATGGAGAGATTAGGGATAAAAGTGAAAGTTGTGAACACAGGGAAAGGTCTGTTTTATACTCTCAGGAAGATCAAGCTTAAGGCTAAGCATTCTAGTGCCCAAAATTCTCCAGGGTCTTCAGATTTGAGTTATTGGTCTACATCTCATAGTTCTCTCGACATAGCCACAAGAGTTTCTTTGAGTTCTATGGATGGAACTGAGCACATGCCTTTAGTTTTCAAGAAAACTGATGTGGGAGCTTCTCCTGGCTTCATTCTTGTTGTGATTGATGCAAATGCAGGACCATTTTCTGAGCTTTACACGATTGTGTCCAACTTCAAGAAAGACCTTCGCAACCCTTGTAAGGTTGTGTGGCTGGATAAGCCCTTTATGCGTAGAATCAACTTCAAGGCGCTTAATCAAGATGACATCGTGACATCGAAACCATTTCATGGTACTCGTTTGTTCCAAACCATAAAGCTCCTTCCTGAATTTGGTGGTTCATGGCAGAGCAATTCTAGTAGAGCAAAGAGGGAAATGAGTAATGAGAGAGCTACATTGAAGACTTACAAGGATCCAGGTTTGTCAAAATACACGTCTCCTCTGCTGGACACATCACAAGTGTGTTCTTCAACTGATGAAAGTACATTCCAAACTGGTGAACAAATTTTGAAGGGAAAAAGACCGTCCAAGGCAAAAATAACTCTTGTTCATCAAGGAGAAACACAAGAGATTGGAAACTCATCAGGGTCTCACAAACCCTTGAGGGGTAAGAAGTTTTTGGTTGCTGATGACAGTGCAATTTTGCGCAATATAGCTTCTGCTACTCTGATTTCTCTTGGTGCAACCGTGGAGCAATGTGAGAATGGTGAACAAGCTGTGAGGCTAGTTGATGAGGGTCTACCTCGGGAGTTTCCTAATCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCAATAATGGACGGGCTTGAGGCAACAAAGTGGATACGAAAGATAGAGAAAGGTTATGGTGTTCGCATTCCTATCATTGCATTGACTGCTGGAACAGAAAGAATAACGATAGAGAGTGGAATGGACTATCACATGGATAAACCTATTAACAGAGAGGATTTACTTAAAGCCATCACATATATAAATGGTAAAATGTGA	3252	0.4151	MEKHVKLLNSKNSVWQLQSEIEELGEVLRPMKSSSTNMARFFSSNLDDTTNVSFSDIKNKVAPFLFAAFETVPYLAQISYIGVEGLFFSYYTHNHQLLAMYSNSSSISVASNKIFIQPVNPETGELHGEPTIMLSNPFINATWIGEALNVSTGFYSFGPNWANSESLFLTSARIMRRGLISLGFSATPITHSVTRIDQQHGTTSYLATKDGKVVVPGIQLTHFLISNDTVSFQSLNANGDPTVNRGTVSCKDEAAASSFNIRDIAYAIHCYTIDIMGIESVYVLGVPEEGYASIDRNYKEKGLMVFVATMVTIFIAFFSFLFVNCRAFRREMHLCASLIKQCEATQQAEKKNMNKSTAFASASHDVRASLAGITGLIEISAELVAPGSELETNLKQMNGCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDLFHLLEDVVDFYHPVAAKKGVDLVLDPCNGSVVGYSRVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRAWTRKPKLLQNSTVTFNQFGFKQYLSCLFGNKTEARSDVESTRSIQEDPHSMDFIFEVDDTGKGIPKENYKSVFENYVQIKDTALGQGGTGLGLGIVQSLVRLMHGDIEIVEKDTGERGTCFKFNVLLTVCENEAVSDGSRREGIGCGSGDRIIQVQEQTMNASCSGSSRICSMSPKLRICSSSPKPEASLVVLLIVDEERQRTSQMFMERLGIKVKVVNTGKGLFYTLRKIKLKAKHSSAQNSPGSSDLSYWSTSHSSLDIATRVSLSSMDGTEHMPLVFKKTDVGASPGFILVVIDANAGPFSELYTIVSNFKKDLRNPCKVVWLDKPFMRRINFKALNQDDIVTSKPFHGTRLFQTIKLLPEFGGSWQSNSSRAKREMSNERATLKTYKDPGLSKYTSPLLDTSQVCSSTDESTFQTGEQILKGKRPSKAKITLVHQGETQEIGNSSGSHKPLRGKKFLVADDSAILRNIASATLISLGATVEQCENGEQAVRLVDEGLPREFPNPPYDYILMDCQMPIMDGLEATKWIRKIEKGYGVRIPIIALTAGTERITIESGMDYHMDKPINREDLLKAITYINGKM	1083

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g01799	1083	CDD	REC_hyHK_CKI1_RcsC-like	959	1076	-	-
	Viun7g01799	1083	ProSiteProfiles	Histidine kinase domain profile.	361	628	IPR005467	-
	Viun7g01799	1083	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	470	626	IPR003594	-
	Viun7g01799	1083	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	343	422	IPR036097	GO:0000155\|GO:0007165
	Viun7g01799	1083	CDD	HisKA	352	416	IPR003661	GO:0000155\|GO:0007165
	Viun7g01799	1083	PRINTS	Bacterial sensor protein C-terminal signature	570	580	IPR004358	GO:0016310\|GO:0016772
	Viun7g01799	1083	PRINTS	Bacterial sensor protein C-terminal signature	586	604	IPR004358	GO:0016310\|GO:0016772
	Viun7g01799	1083	PRINTS	Bacterial sensor protein C-terminal signature	552	566	IPR004358	GO:0016310\|GO:0016772
	Viun7g01799	1083	Gene3D	-	422	633	IPR036890	-
	Viun7g01799	1083	PANTHER	TWO-COMPONENT HISTIDINE KINASE	59	1077	-	-
	Viun7g01799	1083	SMART	HKATPase_4	470	628	IPR003594	-
	Viun7g01799	1083	Gene3D	-	341	421	-	-
	Viun7g01799	1083	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	409	623	IPR036890	-
	Viun7g01799	1083	SUPERFAMILY	CheY-like	953	1077	IPR011006	-
	Viun7g01799	1083	Gene3D	-	936	1080	-	-
	Viun7g01799	1083	ProSiteProfiles	Response regulatory domain profile.	958	1080	IPR001789	GO:0000160
	Viun7g01799	1083	SMART	REC_2	957	1076	IPR001789	GO:0000160
	Viun7g01799	1083	Pfam	Response regulator receiver domain	960	1076	IPR001789	GO:0000160
	Viun7g01799	1083	SMART	HisKA_10	354	420	IPR003661	GO:0000155\|GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g01799	Viun-Chr7	23114040	23119147	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g01799	17	1069	Histidine Kinase Gene Family	AT2G47430	41.063	0.0	714

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Viun7g01799		HATPase_c	2e-24	CL0025

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g01799	-		-	var:108325233	1769.98