Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01798 ATGGAGCTCTCTGTGATTGCTAGAAACATGGAAGAAGTTGTCTTGTTGGTCGATGATTTGAAATCGCTTTCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCACCAAAACCTTGGAAGCTCCTTGTGCTTGTTCGGGGACAGTTAAGTTTGCTCACAGAGACTGCATTCAGACGTGGTGCAACGAGAAAGGAAACACAACTTGTGAAATATGTCTCCAGCAATACGAACCTGGATATTCAGCAGTTCAGAAGAAATCGCAAATAGCTGAAGCAGCAATGACCATTAGGGACAGCCTCCAAATTTCAATGTCTGAACAAGAACCGTTAAACACAAGAATAGTTGAGGGAAACAATTACTCGGAATGCACATATGCTGCAGATAGAAGCGCTGCTTGTTGTCGATCCCTGGCTTTAGCTTTCACTCTTATCTTGCTTGTAAGACATCTTTTTGCACTGCTTACGAATGGAATGGAAGATTATCCATTTACAATTCTTACGGTTTTTTTACTGAGGGCCAGTGGGATTATTATACCTATGTACATAATTATTAAGACGATCGGAGCCATACATAATAATATCAAACGTTATCATCATCTTCATCAGGATTCTGATGATGACTCATCGATATCAGATGGAGATGAAGAAGAAAATGAGAGAGCAGATGATGATGCAATTTTAAGACATTCAGAATCATAG 711 0.3966 MELSVIARNMEEVVLLVDDLKSLSGISRCRICHEEEFESTKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYSAVQKKSQIAEAAMTIRDSLQISMSEQEPLNTRIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLTNGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHLHQDSDDDSSISDGDEEENERADDDAILRHSES 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01798 236 SUPERFAMILY RING/U-box 28 81 - -
Viun7g01798 236 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Viun7g01798 236 Pfam Protein of unknown function (DUF3675) 82 191 IPR022143 -
Viun7g01798 236 MobiDBLite consensus disorder prediction 206 236 - -
Viun7g01798 236 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Viun7g01798 236 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 25 199 IPR033275 -
Viun7g01798 236 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Viun7g01798 236 SMART ringv_2 28 77 IPR011016 GO:0008270
Viun7g01798 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 87 IPR013083 -
Viun7g01798 236 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Viun7g01798 236 CDD RING_CH-C4HC3_MARCH 29 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01798 Viun-Chr7 23107061 23109512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01798 29 150 C3H Transcription Factor Family AT5G05830 26.984 2.92e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01798 - - gmx:100797029 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01798 7 23107061 23109512 Viun7g01798 7 23107061 23109512 ECH
Viun1g02807 1 37345570 37349174 Viun7g01798 7 23107061 23109512 PCT