Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01779 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTAGGGTTGAAGAAGGGTAGGTGGACATCGGAGGAAGATGAGATCTTGGCCAAATACATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCAATGCCTAAGAATGCAGGATTATTGAGGTGTGGAAAGAGTTGCAGGCTCAGATGGATTAACTATTTGAGAGCTGACCTTAAGAGAGGAAACATTTCTGCTGAAGAGGAGAACACCATCGTCAAGTTGCACGCTTCTTTGGGTAACAGGTGGTCTTTGATAGCTAGTCATTTGCCAGGAAGAACAGACAACGAGATCAAGAACTATTGGAATTCTCACCTGAGCAGGAAATTTTACAGTTTCCCAAGGATGGAGAACCAACAAGGTACAGGTGCTGTTGCAGGAACCATTGATACACCTAAAGTGGTGTGTATTCCTCCCAAGCGAAAAGGTGGTAGAACGAGTCGTTGGGCAATGAAGAAGAACAAAACCTACCTTCAAAATGTCGACAGAACCAAACACAGTTTCTGTCAACGAAATAGTACTGACAACACAGTTCCGAAGGCACCCACTCCATCGGCGGAGAGAGAGGGTTTGTGGAACGACACTAGGGAGTCGAAGGCGGTGGAGTGCGACGTCGTAGAAGAGTTTAGAGAGGGTAGAAGGGAGGCTGAGGTAGATGAAAAGTGTGAAAAAGATGAAGACATTTTAGGAGTGTGTGAAATTGAGGGTGTTGATGAGGGGAGTGAGGCGTTGAGTATAAGTGACATGTTGGAAAGTTGCTTGGTGGAAACGTGTGGGATTTGGGACATGACTGAGGAGAGAGAGAGCAACGACGTGGAAATGGTGCCTGATGGTGATGCTGAAGTTGATGCGTGTCCCAACAAAACGTCGTCGTCTGATAGTAGCGTCAATGACTCTTCGTGTTCTTCTTCCATGGCCTTTGGCTTGGATCAACACTGGGATTGGGAGAGCATGATAGAGTTCAATAACATTGCTGAGTCCCAACTCGCTTCTCACAATTTCGATCAGAAAGATGAACTGCTGACGTGGCTGTGGGAGGATGAGGATTGGAAAAGTCATGACAACAATTTGGGAGAGATAGATCTAAAGATACAAAACGACGTCGTTGACTGGCTTCTCTCTTGA 1143 0.4619 MGRAPCCEKVGLKKGRWTSEEDEILAKYIQANGEGSWRSMPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKFYSFPRMENQQGTGAVAGTIDTPKVVCIPPKRKGGRTSRWAMKKNKTYLQNVDRTKHSFCQRNSTDNTVPKAPTPSAEREGLWNDTRESKAVECDVVEEFREGRREAEVDEKCEKDEDILGVCEIEGVDEGSEALSISDMLESCLVETCGIWDMTEERESNDVEMVPDGDAEVDACPNKTSSSDSSVNDSSCSSSMAFGLDQHWDWESMIEFNNIAESQLASHNFDQKDELLTWLWEDEDWKSHDNNLGEIDLKIQNDVVDWLLS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01779 380 SMART sant 66 114 IPR001005 -
Viun7g01779 380 SMART sant 13 63 IPR001005 -
Viun7g01779 380 Gene3D - 71 115 - -
Viun7g01779 380 MobiDBLite consensus disorder prediction 175 197 - -
Viun7g01779 380 CDD SANT 16 61 IPR001005 -
Viun7g01779 380 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun7g01779 380 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun7g01779 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun7g01779 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun7g01779 380 Gene3D - 11 67 - -
Viun7g01779 380 CDD SANT 71 112 IPR001005 -
Viun7g01779 380 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun7g01779 380 FunFam MYB-related transcription factor 13 66 - -
Viun7g01779 380 FunFam Myb transcription factor 71 116 - -
Viun7g01779 380 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun7g01779 380 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun7g01779 380 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01779 Viun-Chr7 22864044 22870426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01779 1 380 MYB Transcription Factor Family AT2G47460 41.791 7.15e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun7g01779 Myb_DNA-binding 5.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01779 K09422 - gmx:100814275 457.603