Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01769 ATGGCAAAAGCTAATGTGAAGAACAAATCCACCGTCGCCCTCCACCCTCCTTACTTCCAGATGATCTCCGATGCAATAACGTCGTTGAAGGAACGCACGGGTTCAAGTCAGCCGGCGATAGCCAAGTTTGTGGAGGAGAAGCACGGCAAAGTGCTACCTCCCATTTTCCGAAAACTTCTCTCCGTTCAGTTGAAAAGTTTGGTGAAATCGGAGAAGCTGTACAAGGTGAAGAACTCCTACAAACTTTCCTCTCCACAGTCTGAGAAACCCAAAACCGCTCCGAAAGAGAAGAAGGTGGCGGAGAAGACGAAGAGGCTGAGTCAGGTGAAGACACCCGAAGCTCTGAAGAAGAAGAAAGCCCCAAGCACGAAGAAATTTGTAGCGGCGGCGGTGTCTGGAGGAGGAAAAGTGAAGTGTTTGAGTCAAGTGAAGACTCCCGAGACCATGAAGAAAACATCCAAATTAACACCTGTCAAACGCAAGGGCACTCCCAAACCCTCCAACGCCAACAAGAAAGCTAGGAAATGA 528 0.4905 MAKANVKNKSTVALHPPYFQMISDAITSLKERTGSSQPAIAKFVEEKHGKVLPPIFRKLLSVQLKSLVKSEKLYKVKNSYKLSSPQSEKPKTAPKEKKVAEKTKRLSQVKTPEALKKKKAPSTKKFVAAAVSGGGKVKCLSQVKTPETMKKTSKLTPVKRKGTPKPSNANKKARK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01769 175 PANTHER HISTONE H1 9 166 - -
Viun7g01769 175 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 14 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun7g01769 175 SUPERFAMILY "Winged helix" DNA-binding domain 15 96 IPR036390 -
Viun7g01769 175 CDD H15 15 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun7g01769 175 SMART h15plus2 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun7g01769 175 MobiDBLite consensus disorder prediction 79 125 - -
Viun7g01769 175 MobiDBLite consensus disorder prediction 138 175 - -
Viun7g01769 175 PRINTS Histone H5 signature 1 22 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun7g01769 175 PRINTS Histone H5 signature 144 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun7g01769 175 PRINTS Histone H5 signature 28 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun7g01769 175 PRINTS Histone H5 signature 106 120 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun7g01769 175 Gene3D - 10 126 IPR036388 -
Viun7g01769 175 Pfam linker histone H1 and H5 family 15 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun7g01769 175 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01769 Viun-Chr7 22733398 22734371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01769 16 137 Single Myb Histone (SMH) Gene Family AT1G72740 32.000 2.88e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01769 K11275 - gmx:100306187 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01769 7 22733398 22734371 Viun7g01769 7 22733398 22734371 ECH