Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01758 ATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGTGGCCGTTGCCTCGCCGCCTCCGATATCTGGCCAAGCTCCTTCGGAAAGGACGATGATTTCGGCTTCGGTTACTCCCAAACCTCAAACCAACAAACCCCCACTGTCAAAACGGCCCAACCTCCCAAAGTTAGCGAGAAAGTTGAGACGAAGCCAGTGAAAAGGCAGAGGAAGAATCTCTACAGAGGGATTCGGCAGCGCCCTTGGGGCAAATGGGCTGCGGAGATTCGCGACCCTAGAAAAGGGGTTCGTGTCTGGCTGGGTACCTTCAACACTGCGGAAGAAGCTGCGAGAGCCTATGATCGCGAAGCTCGAAAAATCCGCGGCAAAAAAGCTAAGGTGAATTTCCCTAACGAGGACGATGAATATTCCATTCAAGCTCGTAATCCAATTCCACCCCTTCCTTTCGCAACCCAAAAACCAACCCCTTATCAGCAACAGTACCGTTGTGATCTCAATAATGCCCCCACAAATCTCAACTTCGAGTTCGGTTATGACCTGAACCACACCGGGGCATTTTCGTCCCACGTGGACTCTGTCAACGCTGACTCGGTTGTCGCTTCCGGCGACGAAAATTCAGGGTTAGCGTCGGGTTCAGAGGGCGCTCATTCGACGAACGAGTTCATGGGGTCTTGTCAGAAAGTGAACGGTTATTTCAACGGAGCAGTGATTGAGAAGGAGAAAGAGATAGAGGTGATTGAGGCTGAAGAGGAAAAGAACAAATTGCAGGAGCTTTCTGAGGAACTGATGGCTTACGAGAATTACATGAAGTTTTATCAGATCCCGTACTATGATGGACAATCTACTATGCCACCGAATAATGTTCAGGGATGGACAGAAGTGTAA 885 0.504 MCGGAIIADFIPRRGRCLAASDIWPSSFGKDDDFGFGYSQTSNQQTPTVKTAQPPKVSEKVETKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNPIPPLPFATQKPTPYQQQYRCDLNNAPTNLNFEFGYDLNHTGAFSSHVDSVNADSVVASGDENSGLASGSEGAHSTNEFMGSCQKVNGYFNGAVIEKEKEIEVIEAEEEKNKLQELSEELMAYENYMKFYQIPYYDGQSTMPPNNVQGWTEV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01758 294 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Viun7g01758 294 Coils Coil 238 268 - -
Viun7g01758 294 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Viun7g01758 294 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Viun7g01758 294 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Viun7g01758 294 MobiDBLite consensus disorder prediction 39 53 - -
Viun7g01758 294 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Viun7g01758 294 PANTHER DNA-BINDING DOMAIN 50 215 IPR044808 GO:0003700|GO:0009873
Viun7g01758 294 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Viun7g01758 294 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Viun7g01758 294 MobiDBLite consensus disorder prediction 39 68 - -
Viun7g01758 294 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Viun7g01758 294 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01758 Viun-Chr7 22529467 22531594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01758 1 131 AP2-EREBP Transcription Factor Family AT3G16770 55.474 2.32e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun7g01758 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01758 K09286 - gmx:100780763 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01758 7 22529467 22531594 Viun7g01758 7 22529467 22531594 ECH