Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01683 ATGTCAAAAATTTCAGGTGATGAAGGAAGTTTCTCCTCGGCAAACAGTGTGGAAGAAGTTGATGAAGAAAGCGAGCAGCAACAGCGACAAAAGCGGCATGGCTCAACTTCTGGGGCTCGCAATCAACACCAGTTGCAGAAGCAACCAACCAAGAAGAAAAGAAACCTACCTGGAACCCCAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAAGAAATAGATTCGTTTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGGAGAGGTCACAATCTGCCATGGAAACTGAGGCAAAGAGCAAGCAACGAGGTGAAGAAAAGGGTTTATGTGTGCCCTGAGCCCTCATGCGTCCACCACAACCCAGCTCGAGCATTAGGAGACCTCACTGGCATAAAAAAGCATTACAGCAGAAAACATGGTGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCACAAAACCTGTGGCACCAGGGAATACAAATGTGATTGTGGGACCATATTTGCCAGAAGAGACAGCTTTATCACACACAGGGCCTTTTGTGACGCATTAACCGAAGAAAACAACCGAGTAAACCCTTCATTAACGAGTGGCACTGGCACTGGCACGACACCACCAAGTTTGCAAAATGAAGTGCAGGAACTCATGGCCACAATGCCTCTAAGCAATAGTCCAAACAACGCAGTAGCAGAATTGAACAACAACTACGAGTCTAGTAAGAGGCCACTGAAAAGCCTATCCCAAGAACATGTTGTCCCAATGGCATTGAAGTCCATGAACATGAGGGGTTGCATGTCCTCTACCACTTCAGCTACACTCTTTGGTGGTCCAAAAAACATGTCACTCCCCTCATCTTCCACCCTTCAACTCAGCCCCAACAACCCTCATACTTTCAATTACTTCCAAGACAGCAAAAACGCTGCTGCATCATCAGCCCACATGTCTGCCACAGCTTTATTACAGAAAGCAGCCCAAATGGGTGCCGCTGCAACCAATAATAGCATTAACTTTCCCACCATGATGCACAAAAGCTTTGTTAGTGCCATCACTGGTCCTTCTTCCTATCACCCCTTCCATCATCAATCTCACATGGCTGGGATCAGTGCTGCTGGAGCCTTCACCGACCATTTTTTTCACAAGGGGCACCAACAAATGTCACCAATACTTGATTCCAACACCAGTGATATGGGAATCTTCGGTGCAATGTTCATGGGAAGTGACCACGTGGAACAAGAGGTTGGTGGTAGTAGTTCAAGTTTGATCCATAGAAGAGATGTATCAGAAGGAACTTCAAGGTTTGGAGGCGGTGACATGACAACGGTTCATGATTTCTTGGGCGTTGGGGGTGCAACTTCAAGAGCAGGGAGTTTGCATGAAGCAGAGAAACAACAGCAGCAAAGTTTGGAGTTAGAAGCATTAACCCAGCAGAGGTTACAAATGGTTAATCACTTTCACCACCACCTTCCACATGGGGATTCTGCTGTGGAGAAGTCCGTTTGGGACATTTAA 1578 0.4626 MSKISGDEGSFSSANSVEEVDEESEQQQRQKRHGSTSGARNQHQLQKQPTKKKRNLPGTPDPNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHHKTCGTREYKCDCGTIFARRDSFITHRAFCDALTEENNRVNPSLTSGTGTGTTPPSLQNEVQELMATMPLSNSPNNAVAELNNNYESSKRPLKSLSQEHVVPMALKSMNMRGCMSSTTSATLFGGPKNMSLPSSSTLQLSPNNPHTFNYFQDSKNAAASSAHMSATALLQKAAQMGAAATNNSINFPTMMHKSFVSAITGPSSYHPFHHQSHMAGISAAGAFTDHFFHKGHQQMSPILDSNTSDMGIFGAMFMGSDHVEQEVGGSSSSLIHRRDVSEGTSRFGGGDMTTVHDFLGVGGATSRAGSLHEAEKQQQQSLELEALTQQRLQMVNHFHHHLPHGDSAVEKSVWDI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01683 525 SMART c2h2final6 156 176 IPR013087 -
Viun7g01683 525 SMART c2h2final6 121 151 IPR013087 -
Viun7g01683 525 SMART c2h2final6 80 102 IPR013087 -
Viun7g01683 525 MobiDBLite consensus disorder prediction 1 17 - -
Viun7g01683 525 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Viun7g01683 525 FunFam protein indeterminate-domain 12-like 59 127 - -
Viun7g01683 525 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Viun7g01683 525 Pfam Zinc finger, C2H2 type 80 102 IPR013087 -
Viun7g01683 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Viun7g01683 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 490 IPR031140 -
Viun7g01683 525 MobiDBLite consensus disorder prediction 1 65 - -
Viun7g01683 525 MobiDBLite consensus disorder prediction 31 45 - -
Viun7g01683 525 Gene3D Classic Zinc Finger 135 214 - -
Viun7g01683 525 Gene3D Classic Zinc Finger 58 126 - -
Viun7g01683 525 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01683 Viun-Chr7 21725698 21728449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01683 35 358 IDZ Gene Family AT3G50700 52.924 9.56e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun7g01683 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01683 - - gmx:100797943 684.871