Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01678 ATGGACTTGTACGGTCGGGGCCCCGCCAGGAATGGATCCAACCCGGTCAACCAACCCGAATGGCGCTCACCGGCCACCGACACTGCTCTCGAAGAATCCATGTGGCATTTGACGTTGGGTGGTGGGGAATCTTACCCGGAGCGGCCCGGCGTGCCCAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCATCCTCGTGACCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGGGAGTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACGGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCTAAAAATGGAGGTGGATATTTAAGTCAAGCTCCACTAAATGTCTACGGATACCCATTAAGGCCTGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCTTCAAGTTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTTCAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCCATTTCCCGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGTGCTCAACCTGCCGTTGGGGGTACATCTTTATATGGAGTAACCCAGTTATCATCACCAACATCAGCTTTTGCAAGACCATATACTCCCCTTCCCTCTACGTCTGGCCCTTTAGGAAGCAGCCTGAAAGAACAATTATTTCCTGAAAGACCTGGTGAACTTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGATCATATTGTGGCACGGCCACTTCTTAATCCTGTTGGACTTCCTTTACGTCCGGGTGTACAACCTTGCGCATTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCGACGTGCAAATTTGACCATCCTTTGGGATCCATGAGATACAGTCCATCGGCATCTTCTCTCATTGATGTGCCTGTTACTCCATATCCAGTTGGTTCTTTGCTGTCTCAGCTGGCCCCTTCAACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCGGGGTCCAAAAAGGAATCTTTTTCAGCCAGAATACCTTCTTCTGGAAATAGTTCCGGTACCTCTGTGGGTTTAATATTCTCACAAGGTGGGTCTGTTTCCCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCTCTGCTAGCAGTAGCAGAAGCACCAGACAAAGTGGTGAGATACGTTGA 1416 0.4845 MDLYGRGPARNGSNPVNQPEWRSPATDTALEESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVPSPGAQPAVGGTSLYGVTQLSSPTSAFARPYTPLPSTSGPLGSSLKEQLFPERPGELECQYYLRTGDCKFGLACRYHHPRDHIVARPLLNPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESFSARIPSSGNSSGTSVGLIFSQGGSVSLSDVQLSSQSSASASSSRSTRQSGEIR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01678 471 Gene3D - 43 123 - -
Viun7g01678 471 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Viun7g01678 471 Gene3D - 127 173 - -
Viun7g01678 471 FunFam Zinc finger nuclease 2 47 124 - -
Viun7g01678 471 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Viun7g01678 471 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Viun7g01678 471 Gene3D - 298 377 - -
Viun7g01678 471 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Viun7g01678 471 MobiDBLite consensus disorder prediction 398 433 - -
Viun7g01678 471 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Viun7g01678 471 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Viun7g01678 471 MobiDBLite consensus disorder prediction 448 471 - -
Viun7g01678 471 MobiDBLite consensus disorder prediction 417 433 - -
Viun7g01678 471 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Viun7g01678 471 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Viun7g01678 471 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Viun7g01678 471 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Viun7g01678 471 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Viun7g01678 471 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Viun7g01678 471 PANTHER PROTEIN PHOSPHATASE RELATED 40 398 - -
Viun7g01678 471 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Viun7g01678 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Viun7g01678 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 323 IPR000571 GO:0046872
Viun7g01678 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Viun7g01678 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Viun7g01678 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Viun7g01678 471 SUPERFAMILY CCCH zinc finger 301 324 IPR036855 GO:0046872
Viun7g01678 471 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Viun7g01678 471 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01678 Viun-Chr7 21673590 21678340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01678 1 435 C2H2 Transcription Factor Family AT5G18550 50.217 1.12e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun7g01678 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01678 - - gmx:100812475 870.152