Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01676 ATGAAGGAACAAAAAACTGAAATTAATACAAGAAAAACAGCGAAAGAAAATGGAGCTGAAAAGCCCATTACAACACACTACTACACTAGAGACCGTACGGTCCTAGTCAGAGAGAAGAAGCAAAACAAAACACACACTTTCTCACTCACTCTCACACACACGCACGCTCCAACGCACGCCCTGTACAGTGAAGCTGTGAAAATCCCCTTTCTGTCTCTCCGCTTCGAAACCACCGAACAACACCAGCTCGCCGATCTTCCACACACTTCAACACCTCTCTACCACCAACCACCTTCTTCACTTCGGACACTCCAACTCAAACCCGTTTCCATGGACTTGTACGGTCGGGCCCCCGTCAGGAACGGATCCAACCCGGTCAACCAACCCGAATGGCCCTCACCGGGCATCGACACTGCTCTCGAAGAATCCATGTGGCATTTAACGCTCGGTGGCGGCGAATCTTACCCGGAGCGGCCCGGCGTTCCCAATTGTGTGTATTACATGCGAACCGGTGTGTGCGGATACGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGTTGCGGCGGTAAGAGCTACGGGGGAGTACCCAGAACGGGTGGGGGAACCTCCATGTCAGTATTATTTAAAGACCGGAACCTGTAAATTTGGAGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGTCAAGCTCCACTAAATACTTACGGATACCCATTACGGCCAGGTGAGAGAGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTGTTACCTGTAAATTCCATCATCCTCAACCCGCTGGCACACCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACCGTTCCTGTGGCTGAACAGTATGCAGGAGCTTCTGCAAACTTAAGAGTGGCAAGGCCCCCTGTATTGTCCGGTTCCTATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAGTTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAACCTGCTGTTGGAGCCACTTCTTTATACGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCGTATACTCCGCTGTCCTCTACTACCAGTCCTTCAGGAAACATACTTAAGGATCAATTATTTCCTGAAAGACCCGGTGAACCTGAATGCCAATACTTTCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGACCATATTGTTGCACGACCATTTCTTAGCCCAATTGGACTTCCTTTACGACCGGGCGTACAACCTTGCGCTTTTTACTTGCAAAACGGGCATTGCAAGTTTGGGTCCACGTGCAAATTTGACCATCCTTTGGGATCTTTGAGCTACAGTCCATCGGTATCTTCTTTCATTGATGTGCCAGTTACTCCATACCCTGTGGGGTCTTTGCTGTCTCAGCTGGCTCCTTCTACAACATCTTCAGAGCTTCGGTCTGAACTGATGTCCGGGTCCAAAAAGGAATCCCTTTCAGCCAGAATACCTTCTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGTTCTATCTCGTTATCTGATGTGCAACTCTCAAGTCCGAGTTCTGCCCCTCTTGGCAGTAGCAGAAACACCAGACAAAGCGGTGAGATACGTTGA 1734 0.4885 MKEQKTEINTRKTAKENGAEKPITTHYYTRDRTVLVREKKQNKTHTFSLTLTHTHAPTHALYSEAVKIPFLSLRFETTEQHQLADLPHTSTPLYHQPPSSLRTLQLKPVSMDLYGRAPVRNGSNPVNQPEWPSPGIDTALEESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVVAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNTYGYPLRPGERECSYYLKTGQCKFGVTCKFHHPQPAGTPLPASAPQFYQQVQSPTVPVAEQYAGASANLRVARPPVLSGSYVQGAYGPVLLSPGVVQFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLSSTTSPSGNILKDQLFPERPGEPECQYFLRTGDCKFGLACRYHHPRDHIVARPFLSPIGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSLSYSPSVSSFIDVPVTPYPVGSLLSQLAPSTTSSELRSELMSGSKKESLSARIPSSGTSVGLIFSQGGSISLSDVQLSSPSSAPLGSSRNTRQSGEIR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01676 577 SUPERFAMILY CCCH zinc finger 452 480 IPR036855 GO:0046872
Viun7g01676 577 ProSiteProfiles Zinc finger C3H1-type profile. 158 186 IPR000571 GO:0046872
Viun7g01676 577 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Viun7g01676 577 SMART c3hfinal6 158 185 IPR000571 GO:0046872
Viun7g01676 577 SMART c3hfinal6 450 477 IPR000571 GO:0046872
Viun7g01676 577 SMART c3hfinal6 406 433 IPR000571 GO:0046872
Viun7g01676 577 SMART c3hfinal6 249 276 IPR000571 GO:0046872
Viun7g01676 577 SUPERFAMILY CCCH zinc finger 252 277 IPR036855 GO:0046872
Viun7g01676 577 SUPERFAMILY CCCH zinc finger 206 231 IPR036855 GO:0046872
Viun7g01676 577 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 452 476 IPR000571 GO:0046872
Viun7g01676 577 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 408 433 IPR000571 GO:0046872
Viun7g01676 577 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 230 IPR000571 GO:0046872
Viun7g01676 577 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 185 IPR000571 GO:0046872
Viun7g01676 577 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 251 276 IPR000571 GO:0046872
Viun7g01676 577 ProSiteProfiles Zinc finger C3H1-type profile. 406 434 IPR000571 GO:0046872
Viun7g01676 577 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Viun7g01676 577 MobiDBLite consensus disorder prediction 1 21 - -
Viun7g01676 577 ProSiteProfiles Zinc finger C3H1-type profile. 450 478 IPR000571 GO:0046872
Viun7g01676 577 MobiDBLite consensus disorder prediction 552 577 - -
Viun7g01676 577 FunFam Zinc finger nuclease 2 157 234 - -
Viun7g01676 577 Gene3D - 238 281 - -
Viun7g01676 577 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Viun7g01676 577 Gene3D - 405 486 - -
Viun7g01676 577 Gene3D - 157 237 - -
Viun7g01676 577 PANTHER PROTEIN PHOSPHATASE RELATED 141 496 - -
Viun7g01676 577 SUPERFAMILY CCCH zinc finger 162 187 IPR036855 GO:0046872
Viun7g01676 577 SUPERFAMILY CCCH zinc finger 411 434 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01676 Viun-Chr7 21667614 21671769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01676 111 550 C2H2 Transcription Factor Family AT5G18550 49.892 3.81e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun7g01676 zf-CCCH 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01676 - - vun:114192085 1146.34